Variant report

Variant	rs56821785
Chromosome Location	chr8:34999322-34999323
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs2012407	0.92[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs2218870	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2923630	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2923631	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2923632	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2923636	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2923637	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2923638	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2923639	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2923640	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2923641	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2981330	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2981331	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2981332	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2981342	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62505637	0.98[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs6468305	0.98[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6986169	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:34998800-34999400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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