The 2.0 version of rSNPBase

Variant report

Variant rs568243327
Chromosome Location chr10:50015318-50015319
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr10:50005200-50026800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr10:50007200-50017200 Weak transcription Rectal Mucosa Donor 29 rectum
3 chr10:50009600-50028000 Weak transcription Sigmoid Colon Sigmoid Colon
4 chr10:50010800-50016000 Enhancers Fetal Thymus thymus
5 chr10:50011200-50015400 Enhancers Fetal Muscle Leg muscle
6 chr10:50011200-50016600 Genic enhancers Primary neutrophils fromperipheralblood blood
7 chr10:50011400-50016200 Genic enhancers Primary monocytes fromperipheralblood blood
8 chr10:50011600-50016200 Genic enhancers Monocytes-CD14+_RO01746 blood
9 chr10:50011600-50017000 Enhancers Fetal Stomach stomach
10 chr10:50012800-50016600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
11 chr10:50012800-50016800 Enhancers NHEK skin
12 chr10:50013000-50016600 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
13 chr10:50013200-50023800 Strong transcription GM12878-XiMat blood
14 chr10:50013600-50028200 Strong transcription Primary B cells from peripheral blood blood
15 chr10:50013600-50061000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
16 chr10:50014200-50016600 Enhancers Primary T helper naive cells fromperipheralblood blood
17 chr10:50014200-50017200 Weak transcription Pancreas Pancrea
18 chr10:50014200-50017400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
19 chr10:50014200-50030000 Weak transcription Right Atrium heart
20 chr10:50014400-50016000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
21 chr10:50014600-50015800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
22 chr10:50014600-50016800 Enhancers Primary T cells from cord blood blood
23 chr10:50014600-50017000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
24 chr10:50014600-50017600 Weak transcription Brain Inferior Temporal Lobe brain
25 chr10:50014600-50019400 Weak transcription Brain Substantia Nigra brain
26 chr10:50014600-50019800 Weak transcription Left Ventricle heart
27 chr10:50014600-50020800 Strong transcription Primary hematopoietic stem cells blood
28 chr10:50014600-50021800 Weak transcription Skeletal Muscle Female skeletal muscle
29 chr10:50014800-50016000 Weak transcription Brain Germinal Matrix brain
30 chr10:50014800-50016000 Weak transcription Fetal Lung lung
31 chr10:50014800-50016200 Weak transcription Primary T helper naive cells from peripheral blood blood
32 chr10:50014800-50016600 Weak transcription Spleen Spleen
33 chr10:50014800-50017200 Weak transcription Lung lung
34 chr10:50014800-50017400 Weak transcription Brain Angular Gyrus brain
35 chr10:50014800-50018600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
36 chr10:50014800-50019600 Weak transcription NHLF lung
37 chr10:50014800-50020600 Weak transcription Adipose Nuclei Adipose
38 chr10:50014800-50020800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
39 chr10:50014800-50020800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
40 chr10:50015000-50018400 Weak transcription Fetal Muscle Trunk muscle
41 chr10:50015000-50023000 Strong transcription Primary hematopoietic stem cells short term culture blood
42 chr10:50015200-50063400 Strong transcription Primary B cells from cord blood blood

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Last update: Aug 31, 2015