Variant report

Variant	rs568280359
Chromosome Location	chr7:137531137-137531138
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv831150	chr7:137500559-137652808	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	esv3406613	chr7:137530437-137532985	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	esv3342190	chr7:137530512-137532910	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137527200-137532600	Active TSS	Brain Anterior Caudate	brain
2	chr7:137528600-137532800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr7:137528800-137532800	Active TSS	Brain Inferior Temporal Lobe	brain
4	chr7:137529400-137531200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
5	chr7:137529600-137531200	Flanking Active TSS	Fetal Brain Male	brain
6	chr7:137530400-137531200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:137530400-137531200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr7:137530400-137531200	Flanking Active TSS	Brain Substantia Nigra	brain
9	chr7:137530400-137531200	Flanking Active TSS	Osteobl	bone
10	chr7:137530400-137531800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
11	chr7:137530400-137531800	Active TSS	NH-A	brain
12	chr7:137530400-137532800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr7:137530600-137531200	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:137530600-137531800	Bivalent/Poised TSS	GM12878-XiMat	blood
15	chr7:137530600-137532400	Active TSS	HSMM	muscle
16	chr7:137530800-137531200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
17	chr7:137530800-137531200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
18	chr7:137530800-137531200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
19	chr7:137530800-137531200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
20	chr7:137530800-137531200	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
21	chr7:137530800-137531400	Enhancers	Fetal Heart	heart
22	chr7:137530800-137531600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
23	chr7:137530800-137531800	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
24	chr7:137530800-137532000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr7:137530800-137532400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
26	chr7:137530800-137532400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
27	chr7:137530800-137532400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr7:137530800-137532400	Active TSS	Brain Cingulate Gyrus	brain
29	chr7:137530800-137532600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
30	chr7:137530800-137532600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
31	chr7:137530800-137532600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
32	chr7:137530800-137532600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
33	chr7:137530800-137532600	Active TSS	Fetal Brain Female	brain
34	chr7:137530800-137532800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr7:137530800-137532800	Active TSS	Brain Angular Gyrus	brain
36	chr7:137531000-137531200	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
37	chr7:137531000-137531200	Flanking Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr7:137531000-137531200	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr7:137531000-137531200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr7:137531000-137531200	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
41	chr7:137531000-137531200	Flanking Bivalent TSS/Enh	Breast Myoepithelial Primary Cells	Breast
42	chr7:137531000-137531200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
43	chr7:137531000-137531200	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
44	chr7:137531000-137531200	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
45	chr7:137531000-137531200	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
46	chr7:137531000-137531200	Bivalent Enhancer	Primary hematopoietic stem cells	blood
47	chr7:137531000-137531200	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
48	chr7:137531000-137531200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
49	chr7:137531000-137531200	Flanking Bivalent TSS/Enh	Primary T helper 17 cells PMA-I stimulated	--
50	chr7:137531000-137531200	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood

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