Variant report

Variant	rs56830227
Chromosome Location	chr18:9699877-9699878
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2298502	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv458024	chr18:9558240-9828448	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv576448	chr18:9558240-9828448	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv576449	chr18:9623052-9700382	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv469897	chr18:9674498-9870517	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv482461	chr18:9674498-9870517	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv1064807	chr18:9695356-9770358	Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9691000-9700000	Weak transcription	Fetal Lung	lung
2	chr18:9695400-9706600	Weak transcription	Lung	lung
3	chr18:9695600-9700000	Weak transcription	K562	blood
4	chr18:9696200-9704600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr18:9696400-9700000	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr18:9696400-9700000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr18:9696400-9700000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr18:9696400-9700400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr18:9696400-9700400	Weak transcription	GM12878-XiMat	blood
10	chr18:9696400-9701800	Weak transcription	Primary B cells from cord blood	blood
11	chr18:9696600-9700000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr18:9696600-9700000	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr18:9696600-9700200	Weak transcription	Primary hematopoietic stem cells	blood
14	chr18:9697200-9701800	Weak transcription	Adipose Nuclei	Adipose
15	chr18:9697400-9700200	Weak transcription	Placenta	Placenta
16	chr18:9697400-9704000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr18:9697600-9700000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr18:9699800-9700200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr18:9699800-9706600	Enhancers	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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