Variant report

Variant	rs568352536
Chromosome Location	chr5:167217998-167217999
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3440684	chr5:167217724-167219572	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167203600-167218800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:167210800-167225000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:167211200-167219200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr5:167212600-167219000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr5:167212800-167218800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr5:167214600-167219800	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr5:167215200-167219000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr5:167216800-167219200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr5:167217000-167218000	Active TSS	Aorta	Aorta
10	chr5:167217200-167218000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr5:167217200-167218000	Flanking Active TSS	Osteobl	bone
12	chr5:167217600-167218000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr5:167217600-167218000	Enhancers	Stomach Smooth Muscle	stomach
14	chr5:167217600-167218000	Enhancers	HSMM	muscle
15	chr5:167217600-167218000	Enhancers	NH-A	brain
16	chr5:167217600-167218200	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr5:167217600-167221200	Weak transcription	Brain Anterior Caudate	brain
18	chr5:167217800-167218600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr5:167217800-167218800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr5:167217800-167218800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr5:167217800-167219000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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