Variant report

Variant	rs568353367
Chromosome Location	chr5:1924828-1924829
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:1923560..1925350-chr5:1937042..1939475,2	MCF-7	breast:
2	chr5:1922868..1925557-chr5:1925659..1927215,2	MCF-7	breast:
3	chr5:1923598..1926065-chr5:2006441..2007973,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:57 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933805	chr5:1450724-1941619	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv817407	chr5:1495354-2191460	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
3	nsv869236	chr5:1719263-2259100	Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
4	nsv881557	chr5:1822326-1932463	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv880886	chr5:1880891-1936443	Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv880460	chr5:1886471-1936443	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv915846	chr5:1891098-2167677	Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
8	nsv881650	chr5:1892995-1944487	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv880653	chr5:1892995-1946697	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
10	nsv1015576	chr5:1894124-1942909	Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
11	nsv880562	chr5:1895829-1936443	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv881174	chr5:1895829-1942834	Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
13	nsv880381	chr5:1895829-1946697	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
14	nsv1026930	chr5:1898993-2126061	Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
15	nsv508344	chr5:1905222-1976860	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
16	nsv881562	chr5:1907974-1976187	Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
17	nsv880964	chr5:1912921-1953161	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
18	esv3436647	chr5:1922652-1927150	Bivalent/Poised TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv3528388	chr5:1923352-1926350	ZNF genes & repeats Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv3439836	chr5:1923477-1926525	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv3528386	chr5:1923877-1926200	Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv3338477	chr5:1924302-1925700	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
23	esv3403502	chr5:1924307-1925271	Weak transcription Enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
24	esv6323	chr5:1924334-1925478	Weak transcription Enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
25	nsv513213	chr5:1924374-1927307	ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
26	esv1981345	chr5:1924412-1925372	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
27	nsv822964	chr5:1924445-1925219	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
28	esv3450217	chr5:1924460-1926436	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
29	esv3468680	chr5:1924464-1925294	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
30	esv3528382	chr5:1924484-1925284	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
31	esv3528383	chr5:1924485-1925314	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
32	esv3528381	chr5:1924505-1925237	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
33	esv3571	chr5:1924514-1925296	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
34	nsv821055	chr5:1924523-1925219	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
35	esv3468678	chr5:1924528-1925228	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
36	esv3528389	chr5:1924532-1925252	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
37	esv3528390	chr5:1924535-1925239	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
38	esv3439377	chr5:1924552-1925222	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
39	esv997465	chr5:1924555-1925219	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
40	nsv822966	chr5:1924555-1925219	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
41	esv3528385	chr5:1924573-1925204	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
42	esv3468679	chr5:1924577-1925207	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
43	esv3528387	chr5:1924589-1925202	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
44	esv1007483	chr5:1924590-1925201	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
45	esv1190151	chr5:1924591-1925203	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
46	esv3468681	chr5:1924591-1925204	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
47	esv3528391	chr5:1924591-1925204	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
48	nsv328687	chr5:1924592-1925203	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
49	esv1000391	chr5:1924604-1925065	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
50	esv12905	chr5:1924604-1925111	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:1924200-1928000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:1924400-1925600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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