Variant report

Variant	rs568401404
Chromosome Location	chr7:2896407-2896408
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:2890202..2892822-chr7:2894073..2897035,2	MCF-7	breast:
2	chr7:2891216..2892935-chr7:2895055..2897737,2	K562	blood:
3	chr7:2795602..2798449-chr7:2895895..2897670,2	MCF-7	breast:
4	chr7:2895086..2897225-chr7:2913092..2915364,2	MCF-7	breast:
5	chr7:2894850..2898157-chr7:2912459..2915037,3	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015700	chr7:2753965-2945848	Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1022612	chr7:2789555-3019200	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv887313	chr7:2875420-2927120	Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv887314	chr7:2875420-2944187	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv887315	chr7:2895627-2935424	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:2884600-2902800	Weak transcription	Right Ventricle	heart
2	chr7:2885000-2902000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr7:2891600-2902000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr7:2891600-2902000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr7:2891600-2902600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr7:2891600-2902800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr7:2892800-2902000	Weak transcription	NHLF	lung
8	chr7:2893200-2902000	Weak transcription	Ovary	ovary
9	chr7:2893400-2900200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr7:2893400-2902600	Weak transcription	GM12878-XiMat	blood
11	chr7:2895800-2896600	Enhancers	Left Ventricle	heart
12	chr7:2895800-2896600	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr7:2895800-2897200	Enhancers	HepG2	liver
14	chr7:2895800-2897600	Enhancers	Pancreas	Pancrea
15	chr7:2895800-2902800	Weak transcription	Stomach Smooth Muscle	stomach
16	chr7:2896000-2896600	Flanking Active TSS	Fetal Heart	heart
17	chr7:2896200-2896600	Enhancers	Right Atrium	heart
18	chr7:2896200-2896800	Enhancers	Pancreatic Islets	Pancreatic Islet
19	chr7:2896400-2896800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr7:2896400-2897400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:2896400-2897600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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