Variant report

Variant	rs568401835
Chromosome Location	chr5:115524315-115524316
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:115523919..115526832-chr5:115553749..115555427,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000232916	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:30 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882736	chr5:115254723-115552945	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv882737	chr5:115263853-115552945	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	esv34146	chr5:115315944-115729919	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv527320	chr5:115382097-115573543	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	esv2755349	chr5:115384101-115733101	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv1032199	chr5:115384131-115525738	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv1019972	chr5:115386860-115563533	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	nsv537869	chr5:115386860-115563533	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
9	nsv1018861	chr5:115397834-115563533	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
10	nsv537870	chr5:115397834-115563533	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
11	nsv882739	chr5:115471015-115552945	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv882740	chr5:115482794-115540041	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv882741	chr5:115484252-115552945	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv1032531	chr5:115489694-115583800	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv882742	chr5:115489770-115584159	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	nsv1032338	chr5:115490345-115533527	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
17	nsv537872	chr5:115490345-115533527	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
18	nsv1034069	chr5:115490345-115563533	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
19	nsv537873	chr5:115490345-115563533	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
20	nsv882743	chr5:115501792-115634127	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
21	nsv1023880	chr5:115508328-115563533	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
22	nsv537874	chr5:115508328-115563533	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
23	nsv1021381	chr5:115509949-115568193	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
24	nsv1023390	chr5:115514834-115537498	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
25	esv2757133	chr5:115515719-115543623	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
26	esv2759371	chr5:115515719-115543623	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
27	nsv524812	chr5:115517238-115584159	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
28	nsv10745	chr5:115519518-115541964	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
29	nsv1028993	chr5:115523717-115563533	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
30	nsv537875	chr5:115523717-115563533	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115481400-115536000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr5:115489200-115526800	Weak transcription	Pancreas	Pancrea
3	chr5:115489800-115528600	Weak transcription	Ovary	ovary
4	chr5:115490000-115524400	Weak transcription	Left Ventricle	heart
5	chr5:115495200-115524400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr5:115497400-115528800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:115499200-115527400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr5:115502400-115524400	Weak transcription	Fetal Intestine Large	intestine
9	chr5:115502400-115526400	Weak transcription	Lung	lung
10	chr5:115508800-115529200	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr5:115509200-115528400	Weak transcription	A549	lung
12	chr5:115509600-115533400	Weak transcription	HSMM	muscle
13	chr5:115510400-115524600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr5:115510400-115526200	Weak transcription	Brain Hippocampus Middle	brain
15	chr5:115510400-115526800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr5:115511800-115533200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr5:115512000-115529200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr5:115512200-115526800	Weak transcription	Fetal Intestine Small	intestine
19	chr5:115517400-115526800	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr5:115518200-115529000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr5:115518800-115529400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr5:115518800-115529800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr5:115518800-115548000	Weak transcription	Psoas Muscle	Psoas
24	chr5:115519800-115524400	Weak transcription	Duodenum Mucosa	Duodenum
25	chr5:115520200-115526400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr5:115520400-115524800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr5:115520400-115528800	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr5:115520800-115524400	Weak transcription	Fetal Muscle Leg	muscle
29	chr5:115520800-115527000	Weak transcription	Fetal Muscle Trunk	muscle
30	chr5:115521000-115524400	Weak transcription	Aorta	Aorta
31	chr5:115521000-115526800	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr5:115521000-115529400	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr5:115521200-115530000	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr5:115521400-115528800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr5:115521600-115527600	Strong transcription	Primary T cells from cord blood	blood
36	chr5:115522000-115526400	Weak transcription	Liver	Liver
37	chr5:115522200-115536000	Weak transcription	Primary B cells from cord blood	blood
38	chr5:115522400-115524600	Weak transcription	Adipose Nuclei	Adipose
39	chr5:115522400-115528000	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr5:115522400-115538000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr5:115522600-115526200	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr5:115522600-115526600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr5:115522600-115526800	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr5:115522600-115536800	Weak transcription	Primary hematopoietic stem cells	blood
45	chr5:115522600-115540200	Weak transcription	Primary B cells from peripheral blood	blood
46	chr5:115523000-115526200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr5:115523000-115527600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr5:115523000-115530400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr5:115523400-115526600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr5:115523400-115528400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links