Variant report

Variant	rs56841183
Chromosome Location	chr1:165533376-165533377
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12239745	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13374021	1.00[AMR][1000 genomes]
rs2485402	0.87[AFR][1000 genomes]
rs28473212	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58477395	1.00[AFR][1000 genomes]
rs74120752	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7549428	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429902	chr1:165531342-165574342	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165530800-165533600	Weak transcription	Left Ventricle	heart
2	chr1:165530800-165533800	Weak transcription	Right Atrium	heart
3	chr1:165531000-165534200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:165531200-165534000	Weak transcription	Right Ventricle	heart
5	chr1:165531400-165533800	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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