Variant report

Variant	rs56843844
Chromosome Location	chr3:113307288-113307289
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs56167882	0.80[AFR][1000 genomes]
rs56985546	0.80[AFR][1000 genomes]
rs58329399	0.80[AFR][1000 genomes]
rs58734831	0.91[AFR][1000 genomes]
rs59848630	0.80[AFR][1000 genomes]
rs59925484	0.80[AFR][1000 genomes]
rs61299722	0.80[AFR][1000 genomes]
rs73855951	0.80[AFR][1000 genomes]
rs73855954	1.00[AFR][1000 genomes]
rs73855956	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013506	chr3:112890608-113680951	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv1004000	chr3:113116778-113513899	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv877349	chr3:113208224-113323787	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv877350	chr3:113208224-113332235	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113280200-113321600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr3:113280600-113314800	Weak transcription	Spleen	Spleen
3	chr3:113285200-113329800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr3:113285200-113343400	Weak transcription	Small Intestine	intestine
5	chr3:113286000-113316800	Weak transcription	Brain Angular Gyrus	brain
6	chr3:113294400-113321600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr3:113296800-113324200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr3:113297400-113315600	Strong transcription	GM12878-XiMat	blood
9	chr3:113297800-113308000	Strong transcription	Primary T cells from cord blood	blood
10	chr3:113298800-113309400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr3:113298800-113315200	Strong transcription	Primary B cells from peripheral blood	blood
12	chr3:113299400-113308000	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr3:113299400-113315400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr3:113299600-113309400	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr3:113300800-113308800	Weak transcription	Thymus	Thymus
16	chr3:113302000-113308200	Strong transcription	Primary T helper cells PMA-I stimulated	--
17	chr3:113302200-113308400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr3:113302200-113309400	Strong transcription	Primary B cells from cord blood	blood
19	chr3:113303400-113308200	Strong transcription	Rectal Mucosa Donor 31	rectum
20	chr3:113303600-113308400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr3:113304200-113308000	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr3:113304800-113309000	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr3:113304800-113311800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr3:113305000-113308800	Weak transcription	Fetal Thymus	thymus
25	chr3:113305000-113309000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr3:113305000-113325000	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr3:113305200-113309200	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr3:113305400-113307400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr3:113305400-113307800	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr3:113305400-113308800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr3:113305400-113308800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr3:113305400-113309000	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr3:113305400-113309000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr3:113305400-113309000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr3:113305400-113309200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr3:113305400-113309800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr3:113305600-113307800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr3:113305600-113308800	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr3:113305600-113308800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr3:113305600-113312000	Weak transcription	Gastric	stomach
41	chr3:113305600-113324600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr3:113305800-113322800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr3:113306000-113320400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr3:113306400-113309200	Strong transcription	Primary hematopoietic stem cells	blood
45	chr3:113307200-113308200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

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