Variant report

Variant	rs56845671
Chromosome Location	chr17:33600123-33600124
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs73278983	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278995	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278997	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73279001	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055936	chr17:33327166-33884184	Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
2	nsv543317	chr17:33327166-33884184	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
3	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
4	esv2422399	chr17:33539240-33618601	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
5	nsv574741	chr17:33552275-33827134	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33581400-33601000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr17:33582600-33601000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr17:33595800-33600400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr17:33596000-33600400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr17:33596200-33600800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr17:33596800-33600200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr17:33596800-33600600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr17:33596800-33600800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr17:33596800-33601000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr17:33596800-33601200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr17:33597600-33601200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr17:33597800-33600600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr17:33597800-33601000	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr17:33598000-33600200	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr17:33598000-33601000	Weak transcription	Fetal Thymus	thymus
16	chr17:33598000-33601200	Weak transcription	Primary T cells from cord blood	blood
17	chr17:33598800-33603400	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr17:33599400-33601400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr17:33600000-33600200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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