Variant report

Variant	rs568479779
Chromosome Location	chr11:67271348-67271349
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr11:67271041-67274152	SK-N-SH	brain:	n/a	n/a
2	MXI1	chr11:67270977-67274595	IMR90	lung:	n/a	n/a
3	ELF1	chr11:67271335-67273967	GM12878	blood:	n/a	chr11:67271675-67271687 chr11:67272739-67272751 chr11:67272757-67272769
4	MAZ	chr11:67271223-67274372	IMR90	lung:	n/a	chr11:67272738-67272748 chr11:67271286-67271296 chr11:67271919-67271928
5	POLR2A	chr11:67271213-67272249	H1-neurons	neurons:	n/a	n/a
6	REST	chr11:67270989-67272486	H1-neurons	neurons:	n/a	chr11:67271172-67271185 chr11:67272371-67272384 chr11:67271073-67271086 chr11:67272242-67272255 chr11:67271170-67271188 chr11:67271554-67271567

No.	Distal block	Cell Line	Cell type
1	chr11:67247191..67252288-chr11:67270350..67277699,12	MCF-7	breast:
2	chr11:67230107..67238941-chr11:67268499..67277838,23	MCF-7	breast:
3	chr11:67269844..67272585-chr11:67351352..67354034,3	K562	blood:
4	chr11:67164456..67171429-chr11:67268926..67279263,19	K562	blood:
5	chr11:67269985..67274388-chr11:67349964..67354078,4	K562	blood:
6	chr11:67182567..67190511-chr11:67270739..67276166,13	MCF-7	breast:
7	chr11:67070027..67071819-chr11:67270841..67273414,2	MCF-7	breast:
8	chr11:67180570..67183103-chr11:67271029..67272927,2	K562	blood:
9	chr11:67208782..67211032-chr11:67270751..67273545,3	K562	blood:
10	chr11:67249454..67253550-chr11:67271231..67274487,6	MCF-7	breast:
11	chr11:67270685..67273123-chr11:67274247..67277444,3	K562	blood:
12	chr11:67249912..67253635-chr11:67270546..67273534,5	K562	blood:
13	chr11:67269882..67273775-chr11:67275933..67278364,3	MCF-7	breast:
14	chr11:67209787..67211313-chr11:67271082..67272865,2	MCF-7	breast:
15	chr11:67207285..67211032-chr11:67270341..67273194,4	K562	blood:
16	chr11:67164491..67170697-chr11:67268115..67277759,17	MCF-7	breast:
17	chr11:67156232..67161608-chr11:67271298..67276147,11	MCF-7	breast:
18	chr11:67201617..67208575-chr11:67270788..67277143,13	K562	blood:
19	chr11:67168005..67170770-chr11:67269467..67273329,6	K562	blood:

Variant related genes	Relation type
PITPNM1	TF binding region
ENSG00000213402	Chromatin interaction
ENSG00000110711	Chromatin interaction
ENSG00000172613	Chromatin interaction
ENSG00000255949	Chromatin interaction
ENSG00000172531	Chromatin interaction
ENSG00000167797	Chromatin interaction
ENSG00000172830	Chromatin interaction
ENSG00000172663	Chromatin interaction
ENSG00000172508	Chromatin interaction
ENSG00000084207	Chromatin interaction
ENSG00000172725	Chromatin interaction
ENSG00000175463	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv897797	chr11:67023040-67293234	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	206 gene(s)	inside rSNPs	diseases
3	nsv1043037	chr11:67027193-67357425	Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
4	nsv897801	chr11:67033076-67432479	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
5	esv1818769	chr11:67138811-67300457	Flanking Active TSS Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	167 gene(s)	inside rSNPs	diseases
6	esv1798859	chr11:67139954-67272983	Active TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
7	nsv897805	chr11:67155210-67283891	ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
8	nsv897806	chr11:67155210-67294308	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
9	nsv897807	chr11:67155210-67414492	Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
10	nsv897808	chr11:67155210-67419855	Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
11	nsv897809	chr11:67156875-67276235	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
12	nsv555254	chr11:67164495-67288594	Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	146 gene(s)	inside rSNPs	diseases
13	nsv534229	chr11:67164667-67411909	Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
14	nsv897813	chr11:67175692-67283891	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
15	nsv521723	chr11:67175692-67311258	Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
16	nsv468604	chr11:67186000-67283891	Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
17	nsv555256	chr11:67186000-67283891	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
18	nsv527056	chr11:67207426-67294308	Genic enhancers Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	115 gene(s)	inside rSNPs	diseases
19	esv2422195	chr11:67234322-67626901	Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	146 gene(s)	inside rSNPs	diseases
20	nsv1052919	chr11:67252337-67306030	Active TSS Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases
21	nsv541078	chr11:67252337-67306030	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases
22	esv3356975	chr11:67270401-67273249	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67251400-67271400	Weak transcription	HUVEC	blood vessel
2	chr11:67251600-67271400	Weak transcription	NHDF-Ad	bronchial
3	chr11:67252600-67271600	Weak transcription	Psoas Muscle	Psoas
4	chr11:67252800-67271400	Weak transcription	Right Atrium	heart
5	chr11:67255800-67272000	Weak transcription	Fetal Kidney	kidney
6	chr11:67261600-67271400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr11:67262800-67271400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:67265600-67271400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr11:67269200-67271400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr11:67270000-67271400	Weak transcription	HSMMtube	muscle
11	chr11:67270000-67271800	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr11:67270000-67272200	Enhancers	Fetal Brain Male	brain
13	chr11:67270200-67271400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr11:67270400-67271400	Genic enhancers	Primary B cells from peripheral blood	blood
15	chr11:67270400-67271600	Flanking Active TSS	Brain Germinal Matrix	brain
16	chr11:67270400-67271600	Flanking Active TSS	Fetal Brain Female	brain
17	chr11:67270600-67271400	Genic enhancers	Primary monocytes fromperipheralblood	blood
18	chr11:67270600-67271400	Enhancers	Primary B cells from cord blood	blood
19	chr11:67270600-67271400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr11:67270600-67271400	Enhancers	Placenta	Placenta
21	chr11:67270600-67271400	Enhancers	Stomach Mucosa	stomach
22	chr11:67270600-67271600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr11:67270600-67271600	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
24	chr11:67270600-67271600	Flanking Active TSS	Hela-S3	cervix
25	chr11:67270600-67272000	Enhancers	Spleen	Spleen
26	chr11:67270600-67276600	Enhancers	Fetal Heart	heart
27	chr11:67270800-67271400	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr11:67270800-67271400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr11:67270800-67271400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr11:67270800-67271400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
31	chr11:67270800-67271400	Bivalent Enhancer	Fetal Muscle Leg	muscle
32	chr11:67270800-67271400	Enhancers	Placenta Amnion	Placenta Amnion
33	chr11:67270800-67271400	Enhancers	Small Intestine	intestine
34	chr11:67270800-67271600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:67270800-67271600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
36	chr11:67270800-67271600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
37	chr11:67270800-67271600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr11:67270800-67271600	Enhancers	Lung	lung
39	chr11:67270800-67271800	Enhancers	Primary T helper naive cells from peripheral blood	blood
40	chr11:67270800-67271800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr11:67270800-67271800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr11:67270800-67272400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
43	chr11:67270800-67273000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr11:67271000-67271400	Transcr. at gene 5' and 3'	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr11:67271000-67271400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr11:67271000-67271400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr11:67271000-67271400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr11:67271000-67271400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr11:67271000-67271400	Flanking Active TSS	Brain Anterior Caudate	brain
50	chr11:67271000-67271400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain

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