The 2.0 version of rSNPBase

Variant report

Variant rs56850142
Chromosome Location chr2:39610080-39610081
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:77 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:39588000-39630400 Weak transcription Placenta Placenta
2 chr2:39591800-39621400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr2:39592800-39617600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr2:39600600-39614600 Weak transcription Aorta Aorta
5 chr2:39603200-39638400 Weak transcription Hela-S3 cervix
6 chr2:39603400-39612000 Weak transcription Fetal Muscle Leg muscle
7 chr2:39603400-39613200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
8 chr2:39603400-39625000 Weak transcription Sigmoid Colon Sigmoid Colon
9 chr2:39603400-39626800 Weak transcription Primary T cells from cord blood blood
10 chr2:39604400-39610200 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
11 chr2:39604600-39610400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
12 chr2:39604600-39610800 Enhancers Skeletal Muscle Male skeletal muscle
13 chr2:39605600-39612400 Weak transcription Primary hematopoietic stem cells short term culture blood
14 chr2:39605800-39612200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
15 chr2:39606200-39610400 Enhancers Fetal Heart heart
16 chr2:39606400-39614000 Weak transcription Right Ventricle heart
17 chr2:39606600-39611800 Enhancers HepG2 liver
18 chr2:39606800-39610800 Enhancers iPS-18 Cell Line embryonic stem cell
19 chr2:39607000-39626800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
20 chr2:39607200-39614600 Weak transcription Stomach Smooth Muscle stomach
21 chr2:39607400-39624800 Weak transcription Stomach Mucosa stomach
22 chr2:39607600-39610400 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
23 chr2:39607600-39619800 Weak transcription Primary hematopoietic stem cells blood
24 chr2:39607600-39643400 Weak transcription Rectal Mucosa Donor 31 rectum
25 chr2:39607800-39610600 Enhancers Skeletal Muscle Female skeletal muscle
26 chr2:39607800-39610800 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
27 chr2:39608000-39612000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
28 chr2:39608000-39612000 Weak transcription NHEK skin
29 chr2:39608000-39622800 Weak transcription Fetal Kidney kidney
30 chr2:39608200-39610200 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
31 chr2:39608200-39613000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
32 chr2:39608400-39612000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
33 chr2:39608400-39612200 Weak transcription HMEC breast
34 chr2:39608400-39612200 Weak transcription HUVEC blood vessel
35 chr2:39608400-39614600 Weak transcription Pancreatic Islets Pancreatic Islet
36 chr2:39608400-39621000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
37 chr2:39608400-39626200 Weak transcription Brain Substantia Nigra brain
38 chr2:39608600-39610200 Enhancers HUES64 Cell Line embryonic stem cell
39 chr2:39609000-39610200 Enhancers ES-I3 Cell Line embryonic stem cell
40 chr2:39609000-39610200 Enhancers H9 Cell Line embryonic stem cell
41 chr2:39609000-39617400 Weak transcription Brain Inferior Temporal Lobe brain
42 chr2:39609200-39610200 Enhancers Fetal Lung lung
43 chr2:39609200-39610200 Weak transcription Psoas Muscle Psoas
44 chr2:39609200-39611000 Weak transcription Left Ventricle heart
45 chr2:39609200-39611000 Weak transcription Ovary ovary
46 chr2:39609200-39612000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
47 chr2:39609200-39612400 Weak transcription HSMMtube muscle
48 chr2:39609200-39614000 Weak transcription Pancreas Pancrea
49 chr2:39609200-39614600 Weak transcription Liver Liver
50 chr2:39609200-39615200 Weak transcription Gastric stomach

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Last update: Aug 31, 2015