Variant report

Variant	rs56850705
Chromosome Location	chr7:150079713-150079714
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:150078994-150080203	GM12878	blood:	n/a	n/a
2	POLR2A	chr7:150079536-150080229	GM12878	blood:	n/a	n/a
3	POLR2A	chr7:150079122-150081143	Raji	blood:	n/a	n/a
4	POLR2A	chr7:150079341-150079763	K562	blood:	n/a	n/a
5	POLR2A	chr7:150079167-150080214	GM18505	blood:	n/a	n/a
6	POLR2A	chr7:150072822-150081034	GM19099	blood:	n/a	n/a
7	POLR2A	chr7:150079556-150080141	GM18951	blood:	n/a	n/a
8	POLR2A	chr7:150079642-150079834	GM12878	blood:	n/a	n/a
9	POLR2A	chr7:150079560-150082140	HepG2	liver:	n/a	n/a
10	POLR2A	chr7:150079588-150080254	GM12891	blood:	n/a	n/a
11	POLR2A	chr7:150079280-150080976	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr7:150063876..150080670-chr7:150093696..150109118,65	MCF-7	breast:
2	chr7:150017073..150026383-chr7:150074145..150079980,13	MCF-7	breast:
3	chr7:150017819..150020177-chr7:150077421..150080084,2	MCF-7	breast:

Variant related genes	Relation type
ZNF775	TF binding region
ENSG00000106526	Chromatin interaction
ENSG00000196456	Chromatin interaction
ENSG00000127399	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs60482865	1.00[AFR][1000 genomes]
rs61387982	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1015582	chr7:149967986-150285104	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	nsv889453	chr7:150009838-150104410	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv889454	chr7:150009838-150115183	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
6	nsv889455	chr7:150013393-150104410	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
7	nsv889456	chr7:150013393-150115183	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
8	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
9	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
10	nsv889457	chr7:150020295-150104410	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
11	nsv889458	chr7:150020295-150115183	Enhancers Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
12	nsv521407	chr7:150020295-150118590	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
13	nsv465211	chr7:150035526-150104410	Flanking Active TSS Active TSS Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
14	nsv608991	chr7:150035526-150104410	Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
15	nsv608992	chr7:150045910-150115183	Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
16	esv1819714	chr7:150055837-150154944	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
17	nsv889461	chr7:150060163-150081485	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
18	nsv889462	chr7:150060163-150108536	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150077000-150080200	Enhancers	Sigmoid Colon	Sigmoid Colon
2	chr7:150077200-150094000	Weak transcription	Aorta	Aorta
3	chr7:150077400-150080600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr7:150077400-150080800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr7:150077400-150081000	Enhancers	Pancreas	Pancrea
6	chr7:150077400-150083400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:150077400-150100800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr7:150077600-150080400	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr7:150077600-150080400	Enhancers	Fetal Intestine Large	intestine
10	chr7:150077600-150081600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr7:150077600-150086200	Weak transcription	NH-A	brain
12	chr7:150077600-150087000	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr7:150077800-150079800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr7:150077800-150079800	Enhancers	Brain Anterior Caudate	brain
15	chr7:150077800-150079800	Enhancers	Brain Substantia Nigra	brain
16	chr7:150077800-150079800	Enhancers	HMEC	breast
17	chr7:150077800-150079800	Weak transcription	NHLF	lung
18	chr7:150077800-150080000	Genic enhancers	Fetal Muscle Leg	muscle
19	chr7:150077800-150080400	Enhancers	Brain Angular Gyrus	brain
20	chr7:150077800-150080600	Enhancers	Fetal Lung	lung
21	chr7:150077800-150080800	Weak transcription	HSMMtube	muscle
22	chr7:150077800-150082200	Genic enhancers	Fetal Stomach	stomach
23	chr7:150077800-150082400	Weak transcription	Primary T cells from cord blood	blood
24	chr7:150077800-150083000	Enhancers	Fetal Heart	heart
25	chr7:150077800-150084000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr7:150077800-150084200	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr7:150077800-150085600	Weak transcription	Psoas Muscle	Psoas
28	chr7:150077800-150085800	Weak transcription	HSMM	muscle
29	chr7:150077800-150085800	Weak transcription	Osteobl	bone
30	chr7:150077800-150086400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr7:150077800-150087600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr7:150077800-150093200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr7:150077800-150096000	Weak transcription	Right Atrium	heart
34	chr7:150077800-150096800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr7:150077800-150097000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr7:150078000-150080000	Weak transcription	Fetal Kidney	kidney
37	chr7:150078000-150080800	Genic enhancers	Dnd41	blood
38	chr7:150078000-150081800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr7:150078000-150082600	Weak transcription	Adipose Nuclei	Adipose
40	chr7:150078000-150083800	Enhancers	Fetal Brain Male	brain
41	chr7:150078000-150085800	Weak transcription	Primary hematopoietic stem cells	blood
42	chr7:150078000-150100600	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr7:150078200-150079800	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr7:150078200-150079800	Weak transcription	K562	blood
45	chr7:150078200-150080600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr7:150078200-150080800	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr7:150078200-150081000	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr7:150078200-150081200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr7:150078200-150081200	Enhancers	HUES64 Cell Line	embryonic stem cell
50	chr7:150078200-150081600	Weak transcription	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links