Variant report

Variant	rs56857681
Chromosome Location	chr5:166727937-166727938
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10043619	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10462891	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10475839	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11739327	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13355217	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4075224	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4349736	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58150693	0.81[EUR][1000 genomes]
rs59094139	0.99[EUR][1000 genomes]
rs61241624	0.99[EUR][1000 genomes]
rs6865179	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7341056	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7730469	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7731005	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869374	chr5:166488702-166817411	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1032183	chr5:166612188-166732287	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv883100	chr5:166718807-166808602	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3470799	chr5:166724240-166729863	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3470800	chr5:166724240-166729863	Transcr. at gene 5' and 3' Enhancers Weak transcription Active TSS Genic enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:166722800-166729600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:166723400-166730800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr5:166724000-166729000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr5:166724000-166729400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr5:166724000-166729600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:166724600-166728000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr5:166724600-166729000	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr5:166724600-166729800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:166724600-166730200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr5:166724600-166730200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr5:166724600-166730600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr5:166724600-166730600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr5:166724600-166731200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:166727000-166728200	Transcr. at gene 5' and 3'	ES-I3 Cell Line	embryonic stem cell
15	chr5:166727800-166728800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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