Variant report

Variant	rs56860243
Chromosome Location	chr1:154466623-154466624
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:154465559..154467468-chr1:154471181..154472753,2	K562	blood:
2	chr1:154461284..154463357-chr1:154466241..154467860,2	K562	blood:
3	chr1:154456945..154459327-chr1:154465899..154468157,2	K562	blood:

Variant related genes	Relation type
ENSG00000169291	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16836074	0.91[AFR][1000 genomes]
rs58011369	0.91[AFR][1000 genomes]
rs72999450	0.89[AFR][1000 genomes]
rs73018290	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73020245	0.91[AFR][1000 genomes]
rs73022025	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948413	chr1:153974621-154797272	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
2	nsv1000402	chr1:153991106-154527053	Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	106 gene(s)	inside rSNPs	diseases
3	nsv521887	chr1:154236570-154684106	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
4	esv1815481	chr1:154465065-154475033	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:154458600-154469000	Weak transcription	Small Intestine	intestine
2	chr1:154461800-154467000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr1:154461800-154473800	Weak transcription	Pancreas	Pancrea
4	chr1:154462800-154467200	Enhancers	Primary B cells from peripheral blood	blood
5	chr1:154463000-154468000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr1:154463200-154467600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:154464000-154472400	Weak transcription	Lung	lung
8	chr1:154464200-154466800	Enhancers	Primary hematopoietic stem cells	blood
9	chr1:154464200-154467600	Weak transcription	Right Ventricle	heart
10	chr1:154464600-154467000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr1:154464800-154466800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr1:154464800-154467400	Enhancers	Primary T cells fromperipheralblood	blood
13	chr1:154464800-154469800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr1:154465000-154467000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr1:154465000-154469000	Weak transcription	Left Ventricle	heart
16	chr1:154465000-154469000	Weak transcription	Right Atrium	heart
17	chr1:154466000-154466800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr1:154466200-154467000	Enhancers	Primary T cells from cord blood	blood
19	chr1:154466200-154467000	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr1:154466200-154467000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr1:154466200-154469400	Weak transcription	Fetal Lung	lung
22	chr1:154466200-154469800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr1:154466200-154469800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr1:154466400-154467600	Enhancers	HUVEC	blood vessel
25	chr1:154466400-154468000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr1:154466400-154468200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr1:154466400-154469000	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr1:154466400-154469000	Weak transcription	Fetal Thymus	thymus
29	chr1:154466400-154469000	Weak transcription	Spleen	Spleen
30	chr1:154466400-154469400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr1:154466400-154469400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr1:154466400-154469400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr1:154466400-154471600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr1:154466600-154466800	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr1:154466600-154467000	Enhancers	Adipose Nuclei	Adipose
36	chr1:154466600-154467600	Weak transcription	Primary B cells from cord blood	blood
37	chr1:154466600-154467600	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr1:154466600-154467800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr1:154466600-154467800	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr1:154466600-154467800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr1:154466600-154467800	Weak transcription	Liver	Liver
42	chr1:154466600-154468000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr1:154466600-154468000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr1:154466600-154468000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr1:154466600-154468000	Weak transcription	GM12878-XiMat	blood
46	chr1:154466600-154469000	Weak transcription	K562	blood
47	chr1:154466600-154469400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr1:154466600-154471200	Weak transcription	Brain Hippocampus Middle	brain

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