Variant report
| Variant | rs568619127 |
|---|---|
| Chromosome Location | chr18:14378696-14378697 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:18)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:18 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | POLR2A | chr18:14378628-14378753 | GM12891 | blood: | n/a | n/a |
| 2 | POLR2A | chr18:14378558-14378759 | GM12878 | blood: | n/a | n/a |
| 3 | HEY1 | chr18:14378631-14378745 | HepG2 | liver: | n/a | n/a |
| 4 | POLR2A | chr18:14378527-14378762 | GM12878 | blood: | n/a | n/a |
| 5 | TCF3 | chr18:14378474-14378761 | GM12878 | blood: | n/a | n/a |
| 6 | POLR2A | chr18:14378511-14378762 | A549 | lung: | n/a | n/a |
| 7 | POLR2A | chr18:14378597-14378742 | A549 | lung: | n/a | n/a |
| 8 | POLR2A | chr18:14378603-14378732 | HepG2 | liver: | n/a | n/a |
| 9 | POLR2A | chr18:14378602-14378793 | Hela-S3 | cervix: | n/a | n/a |
| 10 | POLR2A | chr18:14378556-14378776 | Hela-S3 | cervix: | n/a | n/a |
| 11 | POLR2A | chr18:14378559-14378760 | A549 | lung: | n/a | n/a |
| 12 | HEY1 | chr18:14378522-14378784 | HepG2 | liver: | n/a | n/a |
| 13 | HEY1 | chr18:14378571-14378777 | K562 | blood: | n/a | n/a |
| 14 | POLR2A | chr18:14378567-14378793 | GM12891 | blood: | n/a | n/a |
| 15 | POU2F2 | chr18:14378625-14378745 | GM12878 | blood: | n/a | n/a |
| 16 | POLR2A | chr18:14378569-14378757 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 17 | POLR2A | chr18:14378397-14378958 | GM12892 | blood: | n/a | n/a |
| 18 | POLR2A | chr18:14378632-14378719 | A549 | lung: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| TERF1P2 | TF binding region |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv431972 | chr18:13804043-14753900 | Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 32 gene(s) | inside rSNPs | diseases |
| 2 | esv3424951 | chr18:14078056-14428049 | ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
| 3 | nsv428006 | chr18:14087067-14874733 | Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 36 gene(s) | inside rSNPs | diseases |
| 4 | nsv576531 | chr18:14105923-14540310 | Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 5 | nsv909422 | chr18:14180547-14429096 | Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS | TF binding regionCpG islandlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 6 | nsv909424 | chr18:14196965-14445897 | Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer | TF binding regionCpG islandlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 7 | esv2757670 | chr18:14208563-14558050 | Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 8 | nsv960658 | chr18:14362871-14430233 | Active TSS Flanking Active TSS Enhancers Weak transcription | TF binding regionCpG island | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
