Variant report

Variant	rs56862001
Chromosome Location	chr21:16355690-16355691
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12329892	0.91[ASN][1000 genomes]
rs2228507	0.95[ASN][1000 genomes]
rs3787575	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs57209933	1.00[AMR][1000 genomes]
rs58630413	1.00[AMR][1000 genomes]
rs58699593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs59988518	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs60109042	0.81[ASN][1000 genomes]
rs881996	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs926184	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060151	chr21:16295713-16435497	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv544378	chr21:16295713-16435497	Flanking Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv834048	chr21:16324481-16489570	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16340400-16359400	Weak transcription	HSMMtube	muscle
2	chr21:16340600-16359000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr21:16340600-16359400	Weak transcription	Placenta	Placenta
4	chr21:16340600-16360000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr21:16340600-16361200	Weak transcription	Brain Angular Gyrus	brain
6	chr21:16340600-16361200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr21:16340600-16361400	Weak transcription	Fetal Stomach	stomach
8	chr21:16340600-16367400	Weak transcription	NHDF-Ad	bronchial
9	chr21:16340600-16372800	Weak transcription	GM12878-XiMat	blood
10	chr21:16340600-16374200	Weak transcription	Aorta	Aorta
11	chr21:16340600-16375800	Weak transcription	Right Ventricle	heart
12	chr21:16340800-16356000	Weak transcription	Primary T cells from cord blood	blood
13	chr21:16340800-16356600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr21:16340800-16358800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr21:16340800-16359400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr21:16340800-16359600	Weak transcription	Primary B cells from peripheral blood	blood
17	chr21:16340800-16359600	Weak transcription	Colonic Mucosa	Colon
18	chr21:16340800-16359600	Weak transcription	NHEK	skin
19	chr21:16340800-16360000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr21:16340800-16361200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr21:16340800-16361200	Weak transcription	Pancreas	Pancrea
22	chr21:16340800-16362600	Weak transcription	Thymus	Thymus
23	chr21:16340800-16362800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr21:16340800-16363000	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr21:16340800-16363200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr21:16340800-16363200	Weak transcription	Psoas Muscle	Psoas
27	chr21:16340800-16368000	Weak transcription	HUVEC	blood vessel
28	chr21:16340800-16368200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr21:16340800-16368600	Weak transcription	Esophagus	oesophagus
30	chr21:16340800-16373400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr21:16340800-16374400	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr21:16340800-16375800	Weak transcription	Gastric	stomach
33	chr21:16340800-16375800	Weak transcription	Lung	lung
34	chr21:16340800-16377600	Weak transcription	Stomach Smooth Muscle	stomach
35	chr21:16341000-16356200	Weak transcription	Fetal Kidney	kidney
36	chr21:16341200-16356000	Weak transcription	Adipose Nuclei	Adipose
37	chr21:16341200-16359400	Weak transcription	Fetal Muscle Trunk	muscle
38	chr21:16341200-16359600	Weak transcription	Duodenum Mucosa	Duodenum
39	chr21:16341200-16388600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr21:16341400-16355800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr21:16341400-16356000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr21:16341400-16356000	Weak transcription	Fetal Intestine Large	intestine
43	chr21:16341400-16356000	Weak transcription	Dnd41	blood
44	chr21:16341600-16377000	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr21:16341800-16360200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr21:16342000-16362400	Weak transcription	NHLF	lung
47	chr21:16345400-16356000	Weak transcription	Brain Germinal Matrix	brain
48	chr21:16347000-16361000	Weak transcription	HMEC	breast
49	chr21:16347400-16355800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr21:16347400-16356000	Weak transcription	NH-A	brain

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