Variant report

Variant	rs56862634
Chromosome Location	chr6:144769996-144769997
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs6930893	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7356937	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7450848	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7745167	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7759204	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9496974	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9496975	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9496976	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031253	chr6:144599055-144883013	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv538461	chr6:144599055-144883013	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1023014	chr6:144717963-144806691	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv886739	chr6:144719765-144796516	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144740800-144787600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr6:144741000-144801800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:144743000-144780200	Strong transcription	Primary T cells fromperipheralblood	blood
4	chr6:144753000-144771200	Weak transcription	Stomach Mucosa	stomach
5	chr6:144755400-144770400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:144755400-144781200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr6:144755600-144780800	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr6:144756000-144810600	Weak transcription	Small Intestine	intestine
9	chr6:144756800-144772600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr6:144756800-144777200	Strong transcription	HSMM	muscle
11	chr6:144756800-144780200	Strong transcription	Primary T helper cells PMA-I stimulated	--
12	chr6:144757000-144771000	Strong transcription	Adipose Nuclei	Adipose
13	chr6:144757400-144773800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:144758200-144770800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:144762200-144780400	Weak transcription	Psoas Muscle	Psoas
16	chr6:144762800-144771200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr6:144762800-144780000	Weak transcription	Colon Smooth Muscle	Colon
18	chr6:144762800-144788200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr6:144762800-144790800	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr6:144762800-144791400	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr6:144763000-144780000	Weak transcription	Brain Substantia Nigra	brain
22	chr6:144763000-144790800	Strong transcription	Primary B cells from cord blood	blood
23	chr6:144763000-144813800	Weak transcription	Brain Anterior Caudate	brain
24	chr6:144763200-144770200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr6:144763200-144770400	Weak transcription	Fetal Stomach	stomach
26	chr6:144763200-144770400	Weak transcription	Gastric	stomach
27	chr6:144763200-144771000	Weak transcription	Spleen	Spleen
28	chr6:144763200-144773800	Strong transcription	Primary B cells from peripheral blood	blood
29	chr6:144763200-144773800	Strong transcription	Dnd41	blood
30	chr6:144763200-144781800	Weak transcription	Brain Hippocampus Middle	brain
31	chr6:144763200-144783000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr6:144763200-144790800	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr6:144763200-144793600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr6:144763400-144770000	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr6:144763800-144770000	Weak transcription	Fetal Lung	lung
36	chr6:144763800-144770400	Weak transcription	Lung	lung
37	chr6:144763800-144770400	Weak transcription	Pancreas	Pancrea
38	chr6:144763800-144770800	Weak transcription	Right Ventricle	heart
39	chr6:144763800-144771200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr6:144763800-144773400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr6:144763800-144778400	Strong transcription	Primary hematopoietic stem cells	blood
42	chr6:144763800-144780000	Weak transcription	Rectal Smooth Muscle	rectum
43	chr6:144764000-144770400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr6:144764000-144770400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr6:144764000-144770400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr6:144764000-144770400	Weak transcription	Aorta	Aorta
47	chr6:144764000-144770400	Weak transcription	Esophagus	oesophagus
48	chr6:144764000-144771200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr6:144764000-144780000	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr6:144764000-144781400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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