Variant report

Variant	rs568638453
Chromosome Location	chr5:93916301-93916302
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023191	chr5:93351646-93947928	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv537808	chr5:93351646-93947928	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	esv2758002	chr5:93765205-94042201	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	esv2759354	chr5:93765205-94042201	Active TSS ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv534495	chr5:93789736-93962131	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv598952	chr5:93823951-93956986	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv513248	chr5:93915900-93916875	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
8	esv2534212	chr5:93916020-93917734	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv5853	chr5:93916024-93916807	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
10	esv2382280	chr5:93916093-93916832	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
11	esv3469555	chr5:93916163-93916710	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
12	esv3529771	chr5:93916190-93916708	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
13	esv3529772	chr5:93916191-93916728	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
14	esv3529776	chr5:93916213-93916655	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
15	esv3469556	chr5:93916219-93916691	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
16	esv3469554	chr5:93916222-93916692	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
17	esv3529775	chr5:93916227-93916673	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
18	esv3469557	chr5:93916233-93916648	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
19	esv3529774	chr5:93916240-93916672	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
20	esv3435587	chr5:93916250-93916643	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
21	esv3451430	chr5:93916250-93916645	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
22	esv5260	chr5:93916266-93916936	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
23	esv3436369	chr5:93916268-93916628	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
24	esv3529770	chr5:93916284-93916622	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
25	esv3469558	chr5:93916284-93916637	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
26	esv3529777	chr5:93916284-93916637	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
27	nsv327822	chr5:93916300-93916636	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93903000-93919800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:93908400-93916600	Weak transcription	Ovary	ovary
3	chr5:93909800-93918800	Weak transcription	Pancreas	Pancrea
4	chr5:93911800-93916800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:93911800-93916800	Weak transcription	NHEK	skin
6	chr5:93914200-93918800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr5:93914600-93916600	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr5:93914600-93917800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr5:93914600-93920200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr5:93915400-93917800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr5:93915800-93917000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr5:93916200-93916400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links