Variant report

Variant	rs56864563
Chromosome Location	chr11:16898415-16898416
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16898156..16901710-chr11:16902984..16905374,4	K562	blood:

Variant related genes	Relation type
ENSG00000166689	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73425215	1.00[AMR][1000 genomes]
rs73425234	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16876800-16898600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr11:16877800-16899600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:16884800-16900000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:16885000-16900200	Weak transcription	Stomach Mucosa	stomach
5	chr11:16885200-16902400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr11:16885400-16900800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:16890400-16899000	Weak transcription	Adipose Nuclei	Adipose
8	chr11:16891000-16900000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr11:16891000-16900800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr11:16891000-16901000	Weak transcription	Lung	lung
11	chr11:16891200-16904600	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr11:16891600-16903600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:16891800-16899200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:16893400-16901600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr11:16893400-16902600	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr11:16896000-16899400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr11:16896400-16899400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr11:16896400-16901800	Weak transcription	Fetal Intestine Large	intestine
19	chr11:16896600-16902400	Weak transcription	Duodenum Mucosa	Duodenum
20	chr11:16896600-16902600	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr11:16896800-16902600	Weak transcription	HSMMtube	muscle
22	chr11:16897000-16898600	Enhancers	Right Atrium	heart
23	chr11:16897200-16899800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr11:16897200-16900400	Enhancers	Placenta Amnion	Placenta Amnion
25	chr11:16897400-16898600	Flanking Active TSS	NHEK	skin
26	chr11:16897400-16899400	Enhancers	Placenta	Placenta
27	chr11:16897400-16901200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr11:16897600-16898800	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr11:16897600-16899400	Enhancers	Brain Substantia Nigra	brain
30	chr11:16897600-16901200	Enhancers	Brain Anterior Caudate	brain
31	chr11:16897800-16898600	Enhancers	Brain Cingulate Gyrus	brain
32	chr11:16897800-16900400	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr11:16897800-16901000	Weak transcription	Fetal Intestine Small	intestine
34	chr11:16898000-16898600	Enhancers	H9 Cell Line	embryonic stem cell
35	chr11:16898000-16898800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr11:16898000-16898800	Enhancers	Fetal Lung	lung
37	chr11:16898000-16899800	Enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr11:16898000-16903600	Enhancers	Gastric	stomach
39	chr11:16898200-16898600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr11:16898200-16898800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr11:16898200-16899000	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr11:16898200-16899000	Enhancers	iPS-15b Cell Line	embryonic stem cell
43	chr11:16898200-16899000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr11:16898200-16899200	Weak transcription	Left Ventricle	heart
45	chr11:16898200-16900000	Weak transcription	Pancreas	Pancrea
46	chr11:16898200-16900000	Weak transcription	Right Ventricle	heart
47	chr11:16898400-16898600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr11:16898400-16898600	Flanking Active TSS	Esophagus	oesophagus
49	chr11:16898400-16898600	Flanking Active TSS	Fetal Heart	heart
50	chr11:16898400-16898800	Enhancers	Ovary	ovary

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