Variant report

Variant	rs568665023
Chromosome Location	chr6:34761473-34761474
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:34759201..34762395-chr6:34788232..34791970,5	MCF-7	breast:
2	chr6:34759673..34761787-chr6:34787706..34790146,2	MCF-7	breast:
3	chr6:34758735..34762506-chr6:34853024..34858695,7	MCF-7	breast:
4	chr6:34758609..34760887-chr6:34760994..34763673,2	MCF-7	breast:
5	chr6:34662945..34666396-chr6:34758284..34762755,7	K562	blood:
6	chr6:34732771..34734494-chr6:34760287..34763087,2	K562	blood:
7	chr6:34759998..34762126-chr6:34777640..34780581,3	MCF-7	breast:
8	chr6:34760758..34763688-chr6:34766501..34768387,2	MCF-7	breast:
9	chr6:34760038..34762450-chr6:35204039..35206411,2	K562	blood:
10	chr6:34723754..34729214-chr6:34758122..34762652,9	MCF-7	breast:
11	chr6:34723785..34726777-chr6:34759451..34763099,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000124562	Chromatin interaction
ENSG00000065060	Chromatin interaction
ENSG00000196821	Chromatin interaction
ENSG00000064999	Chromatin interaction
ENSG00000206717	Chromatin interaction
ENSG00000064995	Chromatin interaction
ENSG00000272288	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv885785	chr6:34404636-34874002	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv1033583	chr6:34471572-34828372	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv885793	chr6:34520267-34886436	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv1032557	chr6:34565802-34802008	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv538196	chr6:34565802-34802008	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
8	esv2763967	chr6:34566255-34925463	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
9	nsv1020710	chr6:34607214-34890143	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
10	nsv885795	chr6:34704613-34823187	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases
11	nsv870010	chr6:34713359-34880048	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	33 gene(s)	inside rSNPs	diseases
12	nsv1025374	chr6:34723723-34887316	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	33 gene(s)	inside rSNPs	diseases
13	nsv462905	chr6:34728253-34886436	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
14	nsv602906	chr6:34728253-34886436	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
15	nsv1028363	chr6:34733071-34859045	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
16	nsv885796	chr6:34739726-34823187	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	20 gene(s)	inside rSNPs	diseases
17	nsv1015792	chr6:34741917-34887316	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
18	nsv1021733	chr6:34751052-34887316	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
19	nsv970328	chr6:34760989-34774305	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34758600-34761600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:34758800-34761600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:34758800-34761600	Active TSS	iPS-20b Cell Line	embryonic stem cell
4	chr6:34759000-34761600	Active TSS	H1 Cell Line	embryonic stem cell
5	chr6:34759200-34761600	Active TSS	GM12878-XiMat	blood
6	chr6:34760200-34761600	Flanking Active TSS	Primary hematopoietic stem cells	blood
7	chr6:34760200-34761600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:34760200-34761600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:34760400-34761600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
10	chr6:34760400-34761600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:34760800-34761600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:34760800-34761600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:34761000-34761600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:34761000-34761600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:34761000-34761600	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr6:34761000-34761600	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr6:34761000-34761600	Flanking Active TSS	Liver	Liver
18	chr6:34761000-34761600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
19	chr6:34761000-34761600	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
20	chr6:34761000-34761600	Flanking Active TSS	Hela-S3	cervix
21	chr6:34761000-34761600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
22	chr6:34761000-34762000	Enhancers	Primary T cells fromperipheralblood	blood
23	chr6:34761000-34763600	Weak transcription	NHLF	lung
24	chr6:34761200-34761600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr6:34761200-34761600	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr6:34761200-34761600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
27	chr6:34761200-34761600	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr6:34761200-34761600	Enhancers	Colon Smooth Muscle	Colon
29	chr6:34761200-34761600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
30	chr6:34761200-34761600	Active TSS	Thymus	Thymus
31	chr6:34761200-34761600	Flanking Active TSS	HepG2	liver
32	chr6:34761200-34761600	Transcr. at gene 5' and 3'	K562	blood
33	chr6:34761200-34763600	Weak transcription	HSMM	muscle
34	chr6:34761200-34764000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr6:34761200-34764400	Weak transcription	Lung	lung
36	chr6:34761200-34764400	Weak transcription	Small Intestine	intestine
37	chr6:34761400-34761600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr6:34761400-34761600	Enhancers	Primary monocytes fromperipheralblood	blood
39	chr6:34761400-34761600	Enhancers	Primary neutrophils fromperipheralblood	blood
40	chr6:34761400-34761600	Active TSS	Primary B cells from cord blood	blood
41	chr6:34761400-34761600	Enhancers	Primary T killer memory cells from peripheral blood	blood
42	chr6:34761400-34761600	Enhancers	Adipose Nuclei	Adipose
43	chr6:34761400-34761600	Enhancers	Brain Angular Gyrus	brain
44	chr6:34761400-34761600	Enhancers	Brain Cingulate Gyrus	brain
45	chr6:34761400-34761600	Enhancers	Brain Hippocampus Middle	brain
46	chr6:34761400-34761600	Enhancers	Fetal Heart	heart
47	chr6:34761400-34761600	Enhancers	Fetal Intestine Large	intestine
48	chr6:34761400-34761600	Enhancers	Fetal Lung	lung
49	chr6:34761400-34761600	Enhancers	Rectal Mucosa Donor 29	rectum
50	chr6:34761400-34761600	Enhancers	Skeletal Muscle Male	skeletal muscle

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