Variant report

Variant	rs568676920
Chromosome Location	chr19:39283204-39283205
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057899	chr19:39088319-39475493	Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	nsv911668	chr19:39174669-39291771	Genic enhancers Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	esv1837023	chr19:39190588-39425722	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
4	nsv1064688	chr19:39249059-39291526	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
5	nsv1061904	chr19:39249692-39302843	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
6	nsv911670	chr19:39250308-39322087	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
7	nsv911671	chr19:39252238-39306425	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
8	nsv911672	chr19:39252238-39318006	Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	nsv1063592	chr19:39257977-39287265	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
10	nsv9720	chr19:39277331-39283376	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
11	nsv1058132	chr19:39279522-39302843	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
12	nsv9721	chr19:39281857-39287128	Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39279000-39283400	Weak transcription	HSMM	muscle
2	chr19:39279400-39283400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr19:39279600-39283400	Weak transcription	A549	lung
4	chr19:39279800-39291600	Weak transcription	Stomach Mucosa	stomach
5	chr19:39282200-39291600	Weak transcription	Brain Anterior Caudate	brain
6	chr19:39282800-39283400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr19:39282800-39283600	Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chr19:39282800-39283600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
9	chr19:39282800-39283800	Enhancers	Primary B cells from cord blood	blood
10	chr19:39282800-39283800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
11	chr19:39282800-39284000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr19:39283000-39283400	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
13	chr19:39283000-39283400	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
14	chr19:39283000-39283400	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
15	chr19:39283000-39283400	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr19:39283000-39283400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
17	chr19:39283000-39283400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr19:39283000-39283400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr19:39283000-39283400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr19:39283000-39283400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr19:39283000-39283400	Enhancers	Liver	Liver
22	chr19:39283000-39283400	Active TSS	Brain Cingulate Gyrus	brain
23	chr19:39283000-39283400	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
24	chr19:39283000-39283400	Active TSS	Left Ventricle	heart
25	chr19:39283000-39283400	Enhancers	Pancreas	Pancrea
26	chr19:39283000-39283400	Flanking Active TSS	Right Ventricle	heart
27	chr19:39283000-39283400	Enhancers	Sigmoid Colon	Sigmoid Colon
28	chr19:39283000-39283600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
29	chr19:39283000-39283600	Flanking Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr19:39283000-39283600	Flanking Active TSS	Primary B cells from peripheral blood	blood
31	chr19:39283000-39283600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr19:39283000-39283600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
33	chr19:39283000-39283600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
34	chr19:39283000-39283600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
35	chr19:39283000-39283600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
36	chr19:39283000-39283600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
37	chr19:39283000-39283600	Flanking Active TSS	Fetal Intestine Small	intestine
38	chr19:39283000-39283600	Flanking Active TSS	Fetal Muscle Leg	muscle
39	chr19:39283000-39283600	Flanking Active TSS	Placenta	Placenta
40	chr19:39283000-39283600	Enhancers	Gastric	stomach
41	chr19:39283000-39283600	Enhancers	Lung	lung
42	chr19:39283000-39283600	Active TSS	Psoas Muscle	Psoas
43	chr19:39283000-39283600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
44	chr19:39283000-39283600	Active TSS	Right Atrium	heart
45	chr19:39283000-39283600	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
46	chr19:39283000-39283600	Enhancers	Skeletal Muscle Female	skeletal muscle
47	chr19:39283000-39283600	Flanking Bivalent TSS/Enh	Thymus	Thymus
48	chr19:39283000-39283800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
49	chr19:39283000-39283800	Active TSS	HUES6 Cell Line	embryonic stem cell
50	chr19:39283000-39283800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast

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