Variant report

Variant	rs568679277
Chromosome Location	chr6:150106499-150106500
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150066753..150069159-chr6:150105236..150106762,2	K562	blood:
2	chr6:150103684..150106554-chr6:150183972..150185592,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000268592	Chromatin interaction
ENSG00000120253	Chromatin interaction
ENSG00000120256	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv1803291	chr6:150018508-150164190	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv886763	chr6:150091219-150174507	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv966666	chr6:150092480-150114661	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers	TF binding region Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	esv1819303	chr6:150093678-150132092	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	esv3329994	chr6:150106309-150109807	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150072000-150111000	Weak transcription	Fetal Kidney	kidney
2	chr6:150072000-150152000	Weak transcription	Aorta	Aorta
3	chr6:150072400-150111400	Weak transcription	Colonic Mucosa	Colon
4	chr6:150073800-150182400	Weak transcription	Fetal Brain Male	brain
5	chr6:150077000-150115400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:150077200-150118400	Weak transcription	Pancreas	Pancrea
7	chr6:150077400-150142400	Weak transcription	Fetal Heart	heart
8	chr6:150077800-150118400	Weak transcription	Psoas Muscle	Psoas
9	chr6:150087200-150154000	Weak transcription	Small Intestine	intestine
10	chr6:150087400-150134000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:150087600-150117400	Weak transcription	Brain Substantia Nigra	brain
12	chr6:150087800-150112000	Weak transcription	Right Ventricle	heart
13	chr6:150087800-150112400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr6:150088000-150111200	Weak transcription	Brain Hippocampus Middle	brain
15	chr6:150088000-150112000	Weak transcription	Colon Smooth Muscle	Colon
16	chr6:150088000-150123400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr6:150088000-150160400	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr6:150088200-150115600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr6:150088800-150112000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:150093400-150111000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr6:150093400-150111200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr6:150093400-150111800	Weak transcription	Spleen	Spleen
23	chr6:150093400-150133400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr6:150093600-150115000	Weak transcription	Hela-S3	cervix
25	chr6:150093600-150135200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:150093800-150115800	Weak transcription	Brain Cingulate Gyrus	brain
27	chr6:150094400-150167200	Weak transcription	Rectal Smooth Muscle	rectum
28	chr6:150094800-150111000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr6:150095400-150112000	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr6:150095800-150111200	Weak transcription	Stomach Smooth Muscle	stomach
31	chr6:150097000-150111000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr6:150097800-150115800	Weak transcription	Esophagus	oesophagus
33	chr6:150098000-150123400	Weak transcription	HSMMtube	muscle
34	chr6:150098000-150144000	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr6:150098200-150111000	Weak transcription	Brain Anterior Caudate	brain
36	chr6:150098600-150118200	Weak transcription	Brain Angular Gyrus	brain
37	chr6:150098800-150111200	Weak transcription	A549	lung
38	chr6:150100600-150111600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr6:150100800-150111200	Weak transcription	HUVEC	blood vessel
40	chr6:150100800-150115600	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr6:150101200-150111400	Weak transcription	Gastric	stomach
42	chr6:150101400-150115800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr6:150101400-150123400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr6:150102000-150117000	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr6:150103800-150111000	Weak transcription	NH-A	brain
46	chr6:150104000-150117600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr6:150105000-150111200	Weak transcription	Adipose Nuclei	Adipose
48	chr6:150105200-150111000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr6:150105200-150111200	Weak transcription	HMEC	breast
50	chr6:150105200-150111400	Weak transcription	Sigmoid Colon	Sigmoid Colon

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