Variant report

Variant	rs568689435
Chromosome Location	chr6:43732256-43732257
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:43631256..43632895-chr6:43730979..43733533,2	MCF-7	breast:
2	chr6:43730164..43744120-chr6:44034600..44052665,50	K562	blood:
3	chr6:43730421..43734322-chr6:43919726..43923267,3	K562	blood:
4	chr1:149223199..149225385-chr6:43731929..43733479,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000231881	Chromatin interaction
ENSG00000206737	Chromatin interaction
ENSG00000237686	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869383	chr6:43505094-43752189	Genic enhancers Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
2	nsv931987	chr6:43624625-44350167	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases
3	nsv1018626	chr6:43694649-43803732	Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	esv3336485	chr6:43730848-43733789	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:43709000-43737000	Weak transcription	Right Atrium	heart
2	chr6:43722000-43737400	Weak transcription	Fetal Kidney	kidney
3	chr6:43725800-43733400	Enhancers	Fetal Lung	lung
4	chr6:43727200-43733800	Bivalent Enhancer	HepG2	liver
5	chr6:43727600-43737200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:43729200-43734600	Enhancers	Fetal Stomach	stomach
7	chr6:43729200-43737200	Weak transcription	Spleen	Spleen
8	chr6:43729800-43737400	Enhancers	Fetal Intestine Small	intestine
9	chr6:43730000-43737400	Enhancers	Fetal Intestine Large	intestine
10	chr6:43730400-43732400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:43730400-43732600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:43730400-43732600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:43730800-43734000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:43731000-43733000	Enhancers	H1 Cell Line	embryonic stem cell
15	chr6:43731200-43732400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr6:43731200-43732400	Weak transcription	Pancreas	Pancrea
17	chr6:43731200-43732400	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr6:43731200-43732600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:43731200-43733800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:43731400-43732600	Enhancers	K562	blood
21	chr6:43731400-43737400	Weak transcription	Primary hematopoietic stem cells	blood
22	chr6:43731400-43737400	Enhancers	Stomach Mucosa	stomach
23	chr6:43731600-43733400	Weak transcription	Duodenum Mucosa	Duodenum
24	chr6:43731600-43733800	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr6:43731600-43735400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr6:43731800-43732600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr6:43731800-43732800	Bivalent Enhancer	Fetal Muscle Leg	muscle
28	chr6:43731800-43733800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr6:43731800-43735800	Weak transcription	Ovary	ovary
30	chr6:43732000-43732800	Enhancers	Fetal Muscle Trunk	muscle
31	chr6:43732000-43735800	Weak transcription	Osteobl	bone
32	chr6:43732000-43737400	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr6:43732200-43732800	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr6:43732200-43732800	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links