Variant report

Variant	rs568700112
Chromosome Location	chr3:50711427-50711428
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr3:50710949-50712130	HEK293-T-REx	kidney:	n/a	n/a
2	SPI1	chr3:50711412-50711630	K562	blood:	n/a	chr3:50711559-50711568
3	SPI1	chr3:50711275-50711820	HL-60	blood:	n/a	chr3:50711559-50711568
4	SPI1	chr3:50711302-50711775	HL-60	blood:	n/a	chr3:50711559-50711568
5	KAP1	chr3:50711115-50712120	HEK293	kidney:	n/a	n/a

Variant related genes	Relation type
MIR4787	TF binding region
DOCK3	TF binding region

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398465	chr3:50710948-50713996	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50687000-50712000	Weak transcription	Right Atrium	heart
2	chr3:50709000-50711600	Weak transcription	Pancreas	Pancrea
3	chr3:50709000-50711600	Weak transcription	Right Ventricle	heart
4	chr3:50709000-50711800	Weak transcription	Brain Hippocampus Middle	brain
5	chr3:50709000-50711800	Weak transcription	Esophagus	oesophagus
6	chr3:50709400-50711800	Weak transcription	HSMMtube	muscle
7	chr3:50710200-50711800	Weak transcription	HSMM	muscle
8	chr3:50711000-50711600	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr3:50711200-50711600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
10	chr3:50711400-50711600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
11	chr3:50711400-50711600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
12	chr3:50711400-50711600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr3:50711400-50711600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
14	chr3:50711400-50711600	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr3:50711400-50711600	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr3:50711400-50711600	Enhancers	Brain Cingulate Gyrus	brain
17	chr3:50711400-50711600	Bivalent Enhancer	Fetal Brain Female	brain
18	chr3:50711400-50711600	Enhancers	Stomach Smooth Muscle	stomach
19	chr3:50711400-50711600	Flanking Bivalent TSS/Enh	NH-A	brain
20	chr3:50711400-50711800	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr3:50711400-50711800	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr3:50711400-50711800	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr3:50711400-50711800	Bivalent Enhancer	Fetal Muscle Leg	muscle
24	chr3:50711400-50712000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
25	chr3:50711400-50712000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
26	chr3:50711400-50712000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
27	chr3:50711400-50712000	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
28	chr3:50711400-50712200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
29	chr3:50711400-50714000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
30	chr3:50711400-50714400	Active TSS	Brain Angular Gyrus	brain
31	chr3:50711400-50714400	Active TSS	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links