Variant report

Variant	rs56871370
Chromosome Location	chr3:142891854-142891855
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10513192	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10935483	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12489438	0.92[ASN][1000 genomes]
rs1449866	0.81[AMR][1000 genomes]
rs4683756	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67722735	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757893	chr3:142720230-142962932	Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2759183	chr3:142720230-142964373	Strong transcription Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv508250	chr3:142842454-142943722	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv34280	chr3:142887460-142962075	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142889800-142892000	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr3:142890000-142892000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr3:142890200-142892000	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr3:142890400-142892000	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr3:142890600-142892000	Flanking Active TSS	Dnd41	blood
6	chr3:142891000-142893400	ZNF genes & repeats	GM12878-XiMat	blood
7	chr3:142891400-142894400	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr3:142891600-142892600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr3:142891600-142894800	Enhancers	Primary T cells from cord blood	blood
10	chr3:142891600-142897000	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr3:142891800-142892800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr3:142891800-142892800	Weak transcription	Fetal Lung	lung
13	chr3:142891800-142893000	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr3:142891800-142894000	Weak transcription	Thymus	Thymus
15	chr3:142891800-142894600	Enhancers	Fetal Thymus	thymus
16	chr3:142891800-142894800	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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