Variant report

Variant	rs568713803
Chromosome Location	chr18:29429666-29429667
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059078	chr18:29225522-29454980	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv543675	chr18:29225522-29454980	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv431975	chr18:29311034-29527902	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
4	nsv1057229	chr18:29335175-29514265	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	esv990849	chr18:29428805-29431175	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29405600-29481800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr18:29406200-29518600	Weak transcription	Fetal Brain Male	brain
3	chr18:29406800-29431600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr18:29407400-29429800	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr18:29407400-29432000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr18:29407800-29431200	Weak transcription	Psoas Muscle	Psoas
7	chr18:29408000-29460200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr18:29408600-29471800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr18:29409000-29439000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr18:29409000-29456600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr18:29409600-29430000	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr18:29409600-29430600	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr18:29409800-29432000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr18:29409800-29466600	Weak transcription	Gastric	stomach
15	chr18:29410400-29431400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr18:29413200-29437200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr18:29413800-29456600	Weak transcription	Spleen	Spleen
18	chr18:29414200-29444800	Strong transcription	Fetal Thymus	thymus
19	chr18:29414400-29448200	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr18:29415800-29461800	Weak transcription	Fetal Heart	heart
21	chr18:29416000-29432000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr18:29416200-29430000	Weak transcription	Lung	lung
23	chr18:29416200-29456600	Weak transcription	Aorta	Aorta
24	chr18:29417600-29515600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr18:29418200-29429800	Weak transcription	Fetal Intestine Small	intestine
26	chr18:29418200-29431400	Weak transcription	Fetal Stomach	stomach
27	chr18:29418400-29454800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr18:29418400-29470400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr18:29418600-29431800	Weak transcription	Small Intestine	intestine
30	chr18:29418600-29432000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr18:29418600-29436000	Weak transcription	Pancreas	Pancrea
32	chr18:29418600-29454400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr18:29418600-29456600	Weak transcription	Right Ventricle	heart
34	chr18:29418800-29430400	Weak transcription	Fetal Kidney	kidney
35	chr18:29418800-29431000	Weak transcription	HSMMtube	muscle
36	chr18:29418800-29431400	Weak transcription	Brain Angular Gyrus	brain
37	chr18:29418800-29431400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr18:29418800-29431600	Weak transcription	Brain Substantia Nigra	brain
39	chr18:29418800-29431800	Weak transcription	Brain Anterior Caudate	brain
40	chr18:29418800-29432000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr18:29418800-29432000	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr18:29418800-29454800	Weak transcription	Colonic Mucosa	Colon
43	chr18:29418800-29456600	Weak transcription	NHEK	skin
44	chr18:29419000-29431400	Weak transcription	Colon Smooth Muscle	Colon
45	chr18:29419000-29431800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr18:29419000-29431800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr18:29419000-29431800	Weak transcription	Stomach Mucosa	stomach
48	chr18:29419000-29432000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr18:29419000-29433400	Weak transcription	A549	lung
50	chr18:29419000-29433600	Weak transcription	HepG2	liver

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