Variant report

Variant	rs56875565
Chromosome Location	chr3:141560023-141560024
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141550320..141553928-chr3:141559499..141562677,3	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs58906691	1.00[AMR][1000 genomes]
rs61497113	1.00[AMR][1000 genomes]
rs72984370	1.00[AMR][1000 genomes]
rs72984372	1.00[AMR][1000 genomes]
rs72984376	1.00[AMR][1000 genomes]
rs72988227	1.00[AMR][1000 genomes]
rs73000333	1.00[AMR][1000 genomes]
rs9874313	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1013352	chr3:141541105-141870293	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141549800-141564400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:141550600-141560200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:141550800-141571800	Weak transcription	Esophagus	oesophagus
4	chr3:141553000-141562600	Weak transcription	K562	blood
5	chr3:141558800-141560200	Weak transcription	Left Ventricle	heart
6	chr3:141559400-141560400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr3:141559400-141560400	Flanking Active TSS	Hela-S3	cervix
8	chr3:141559400-141560600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:141559400-141560600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr3:141559400-141561200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:141559400-141561200	Enhancers	HMEC	breast
12	chr3:141559600-141560200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr3:141559600-141560200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr3:141559600-141560200	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr3:141559600-141560400	Enhancers	H9 Cell Line	embryonic stem cell
16	chr3:141559600-141560400	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr3:141559600-141560400	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr3:141559600-141560400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr3:141559600-141560400	Flanking Active TSS	Osteobl	bone
20	chr3:141559600-141560600	Enhancers	HSMM	muscle
21	chr3:141559600-141560600	Flanking Active TSS	NHEK	skin
22	chr3:141559800-141560200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr3:141559800-141560400	Enhancers	H1 Cell Line	embryonic stem cell
24	chr3:141559800-141560400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr3:141559800-141560400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr3:141559800-141560400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr3:141559800-141560400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr3:141559800-141560400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr3:141559800-141560600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
30	chr3:141559800-141560600	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr3:141559800-141560600	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr3:141560000-141560200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr3:141560000-141560600	Enhancers	NH-A	brain
34	chr3:141560000-141561200	Enhancers	HUVEC	blood vessel

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