Variant report

Variant	rs56877961
Chromosome Location	chr12:105779027-105779028
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs58756090	1.00[AMR][1000 genomes]
rs58811447	1.00[AMR][1000 genomes]
rs59078353	1.00[AMR][1000 genomes]
rs59308959	1.00[AMR][1000 genomes]
rs60594465	1.00[AMR][1000 genomes]
rs60785893	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899500	chr12:105742674-105803028	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105764800-105803600	Weak transcription	Thymus	Thymus
2	chr12:105777000-105787400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:105777200-105781400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr12:105777200-105783000	Weak transcription	NHLF	lung
5	chr12:105777200-105787200	Weak transcription	NH-A	brain
6	chr12:105777200-105787200	Weak transcription	NHDF-Ad	bronchial
7	chr12:105777200-105787400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr12:105777200-105787400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr12:105777200-105793400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr12:105777400-105781400	Weak transcription	Fetal Stomach	stomach
11	chr12:105777400-105793200	Weak transcription	Aorta	Aorta
12	chr12:105777600-105781200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr12:105778200-105779400	Enhancers	Fetal Intestine Small	intestine
14	chr12:105778200-105779600	Enhancers	Fetal Intestine Large	intestine
15	chr12:105778200-105779600	Enhancers	HSMMtube	muscle
16	chr12:105778400-105779400	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr12:105778400-105779600	Enhancers	HMEC	breast
18	chr12:105778600-105779200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr12:105778600-105779200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr12:105778600-105779200	Enhancers	NHEK	skin
21	chr12:105778600-105779600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr12:105778800-105779200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr12:105778800-105779200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr12:105778800-105779200	Enhancers	Osteobl	bone
25	chr12:105779000-105787400	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr12:105779000-105787400	Weak transcription	HSMM	muscle

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