Variant report

Variant	rs568821408
Chromosome Location	chr9:116112848-116112849
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116109902..116113383-chr9:116162345..116166968,8	MCF-7	breast:
2	chr9:116110213..116113414-chr9:116171126..116174421,5	MCF-7	breast:
3	chr9:116111218..116114895-chr9:116159419..116161993,4	MCF-7	breast:
4	chr9:116108846..116117047-chr9:116126327..116140994,30	MCF-7	breast:

Variant related genes	Relation type
ENSG00000157653	Chromatin interaction
ENSG00000119431	Chromatin interaction
ENSG00000148218	Chromatin interaction
ENSG00000148229	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1042663	chr9:115920158-116167140	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv893744	chr9:115934852-116170227	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv519849	chr9:116111407-116144973	Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116111200-116113000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
2	chr9:116111200-116113000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr9:116111200-116113000	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr9:116111400-116113600	Flanking Active TSS	Primary hematopoietic stem cells	blood
5	chr9:116111400-116114000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
6	chr9:116111800-116113600	Active TSS	Gastric	stomach
7	chr9:116112000-116113400	Flanking Active TSS	Primary B cells from cord blood	blood
8	chr9:116112000-116113400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
9	chr9:116112000-116114000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr9:116112200-116113000	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr9:116112200-116113000	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
12	chr9:116112200-116113000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
13	chr9:116112200-116113200	Bivalent Enhancer	Fetal Heart	heart
14	chr9:116112200-116113600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
15	chr9:116112200-116113600	Enhancers	Spleen	Spleen
16	chr9:116112200-116113800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr9:116112200-116113800	Flanking Active TSS	GM12878-XiMat	blood
18	chr9:116112400-116113000	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr9:116112400-116113000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
20	chr9:116112400-116113000	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
21	chr9:116112400-116113000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr9:116112400-116113000	Flanking Active TSS	Brain Anterior Caudate	brain
23	chr9:116112400-116113000	Flanking Active TSS	Colonic Mucosa	Colon
24	chr9:116112400-116113000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
25	chr9:116112400-116113000	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 29	rectum
26	chr9:116112400-116113000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
27	chr9:116112400-116113600	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
28	chr9:116112400-116113600	Bivalent Enhancer	Fetal Thymus	thymus
29	chr9:116112400-116113800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
30	chr9:116112600-116113000	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
31	chr9:116112600-116113000	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
32	chr9:116112600-116113000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr9:116112600-116113000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr9:116112600-116113000	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
35	chr9:116112600-116113000	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
36	chr9:116112600-116113000	Bivalent Enhancer	Brain Hippocampus Middle	brain
37	chr9:116112600-116113000	Bivalent Enhancer	Fetal Muscle Leg	muscle
38	chr9:116112600-116113000	Enhancers	Placenta	Placenta
39	chr9:116112600-116113000	Enhancers	Right Atrium	heart
40	chr9:116112600-116113000	Enhancers	Right Ventricle	heart
41	chr9:116112600-116113000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
42	chr9:116112600-116113000	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
43	chr9:116112600-116113200	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
44	chr9:116112600-116113200	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
45	chr9:116112600-116113400	Bivalent Enhancer	Thymus	Thymus
46	chr9:116112600-116113600	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr9:116112600-116113600	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
48	chr9:116112600-116113800	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
49	chr9:116112600-116113800	Enhancers	Sigmoid Colon	Sigmoid Colon
50	chr9:116112600-116113800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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