Variant report

Variant	rs56887670
Chromosome Location	chr9:13602977-13602978
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs57458731	1.00[AMR][1000 genomes]
rs57530090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59383153	1.00[AMR][1000 genomes]
rs59568565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61604973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73402413	1.00[AMR][1000 genomes]
rs73402427	1.00[AMR][1000 genomes]
rs73402432	1.00[AMR][1000 genomes]
rs73402436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73402438	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73402455	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892585	chr9:13508282-13621142	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1017792	chr9:13529680-13654107	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1023684	chr9:13529680-13744602	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv540067	chr9:13529680-13744602	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1026786	chr9:13530105-13627116	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv892586	chr9:13601074-13621142	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv892587	chr9:13601074-13732363	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13596600-13607800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:13596600-13607800	Weak transcription	Psoas Muscle	Psoas
3	chr9:13597600-13606200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr9:13597600-13606200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr9:13597600-13606200	Weak transcription	Adipose Nuclei	Adipose
6	chr9:13597600-13606400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr9:13600200-13607600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr9:13602800-13603600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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