The 2.0 version of rSNPBase

Variant report

Variant rs568889773
Chromosome Location chr2:178286407-178286408
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:71 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:178258800-178294200 Weak transcription Thymus Thymus
2 chr2:178263400-178291800 Weak transcription Duodenum Mucosa Duodenum
3 chr2:178264200-178291600 Weak transcription Primary T regulatory cells fromperipheralblood blood
4 chr2:178265600-178287000 Weak transcription K562 blood
5 chr2:178270400-178294400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
6 chr2:178271800-178291600 Weak transcription Primary T helper cells PMA-I stimulated --
7 chr2:178272800-178295200 Weak transcription Left Ventricle heart
8 chr2:178273000-178288800 Weak transcription GM12878-XiMat blood
9 chr2:178273400-178286600 Weak transcription HSMMtube muscle
10 chr2:178273400-178288600 Weak transcription Primary T cells from cord blood blood
11 chr2:178274600-178291800 Weak transcription Primary B cells from cord blood blood
12 chr2:178276400-178291400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
13 chr2:178276800-178289800 Weak transcription Fetal Intestine Large intestine
14 chr2:178276800-178294400 Weak transcription Psoas Muscle Psoas
15 chr2:178277400-178291800 Weak transcription Primary T helper cells fromperipheralblood blood
16 chr2:178279600-178294400 Weak transcription Rectal Mucosa Donor 31 rectum
17 chr2:178280200-178291600 Weak transcription Primary T cells fromperipheralblood blood
18 chr2:178280400-178296000 Weak transcription Small Intestine intestine
19 chr2:178280800-178294400 Weak transcription Rectal Mucosa Donor 29 rectum
20 chr2:178281200-178289400 Weak transcription Breast Myoepithelial Primary Cells Breast
21 chr2:178281200-178291600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
22 chr2:178281200-178292200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
23 chr2:178281800-178291800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
24 chr2:178282800-178287200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
25 chr2:178283000-178294600 Weak transcription Fetal Kidney kidney
26 chr2:178283200-178286600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
27 chr2:178283800-178294200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
28 chr2:178283800-178295200 Weak transcription iPS-18 Cell Line embryonic stem cell
29 chr2:178284000-178294200 Weak transcription NHLF lung
30 chr2:178284200-178286600 Weak transcription Primary hematopoietic stem cells short term culture blood
31 chr2:178284200-178291600 Weak transcription Fetal Lung lung
32 chr2:178284400-178286600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
33 chr2:178284400-178286600 Weak transcription NH-A brain
34 chr2:178284400-178286800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
35 chr2:178284400-178289400 Weak transcription Adipose Nuclei Adipose
36 chr2:178284400-178291800 Weak transcription Duodenum Smooth Muscle Duodenum
37 chr2:178284400-178292000 Weak transcription iPS-20b Cell Line embryonic stem cell
38 chr2:178284400-178292000 Weak transcription Rectal Smooth Muscle rectum
39 chr2:178284400-178294000 Weak transcription Fetal Thymus thymus
40 chr2:178284600-178286800 Weak transcription Osteobl bone
41 chr2:178284600-178294000 Weak transcription HSMM muscle
42 chr2:178284600-178294400 Weak transcription Muscle Satellite Cultured Cells --
43 chr2:178284600-178295800 Weak transcription Colon Smooth Muscle Colon
44 chr2:178284800-178291000 Weak transcription Brain Angular Gyrus brain
45 chr2:178284800-178294200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
46 chr2:178284800-178294400 Weak transcription Liver Liver
47 chr2:178285000-178286800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
48 chr2:178285000-178287000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
49 chr2:178285000-178287600 Strong transcription Primary Natural Killer cells fromperipheralblood blood
50 chr2:178285000-178289800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived

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Last update: Aug 31, 2015