Variant report

Variant	rs568898049
Chromosome Location	chr5:145214234-145214235
allele	-/TA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:145213194..145215106-chr5:145826697..145828661,2	K562	blood:
2	chr5:145213219..145215164-chr5:145314647..145317040,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PRELID2-5	chr5:145214215-145214495	NONHSAT104387

Variant related genes	Relation type
ENSG00000113649	Chromatin interaction
ENSG00000156463	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329004	chr5:145213984-145216532	Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145210600-145214400	Weak transcription	Primary T cells from cord blood	blood
2	chr5:145211000-145214400	Weak transcription	HSMMtube	muscle
3	chr5:145212800-145215400	Active TSS	Colonic Mucosa	Colon
4	chr5:145212800-145216000	Active TSS	Rectal Smooth Muscle	rectum
5	chr5:145213000-145215400	Active TSS	Rectal Mucosa Donor 29	rectum
6	chr5:145213200-145215600	Active TSS	NHLF	lung
7	chr5:145213400-145214800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr5:145213400-145215400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr5:145213400-145215400	Active TSS	Fetal Intestine Large	intestine
10	chr5:145213400-145215400	Active TSS	Fetal Intestine Small	intestine
11	chr5:145213800-145214600	Flanking Active TSS	HUVEC	blood vessel
12	chr5:145213800-145214800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr5:145214000-145214400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
14	chr5:145214000-145214400	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr5:145214000-145214400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr5:145214000-145214400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr5:145214000-145214400	Flanking Active TSS	HMEC	breast
18	chr5:145214000-145214600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr5:145214000-145214600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr5:145214000-145214600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
21	chr5:145214000-145214600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr5:145214000-145214600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr5:145214000-145214600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
24	chr5:145214000-145214600	Flanking Active TSS	Fetal Lung	lung
25	chr5:145214000-145214600	Active TSS	Skeletal Muscle Male	skeletal muscle
26	chr5:145214000-145214600	Flanking Active TSS	Stomach Smooth Muscle	stomach
27	chr5:145214000-145214600	Flanking Active TSS	Osteobl	bone
28	chr5:145214000-145214800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr5:145214000-145214800	Flanking Active TSS	Adipose Nuclei	Adipose
30	chr5:145214000-145214800	Flanking Active TSS	NHEK	skin
31	chr5:145214000-145215200	Active TSS	Primary hematopoietic stem cells short term culture	blood
32	chr5:145214000-145215200	Active TSS	NH-A	brain
33	chr5:145214000-145215200	Active TSS	NHDF-Ad	bronchial
34	chr5:145214000-145215400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr5:145214000-145215600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr5:145214000-145215600	Active TSS	Ovary	ovary
37	chr5:145214000-145215800	Active TSS	Pancreatic Islets	Pancreatic Islet
38	chr5:145214200-145214400	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
39	chr5:145214200-145214400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr5:145214200-145214400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr5:145214200-145214400	Flanking Active TSS	H9 Cell Line	embryonic stem cell
42	chr5:145214200-145214400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr5:145214200-145214400	Active TSS	Primary B cells from cord blood	blood
44	chr5:145214200-145214400	Flanking Active TSS	Primary hematopoietic stem cells	blood
45	chr5:145214200-145214400	Active TSS	Primary T regulatory cells fromperipheralblood	blood
46	chr5:145214200-145214400	Flanking Active TSS	Brain Cingulate Gyrus	brain
47	chr5:145214200-145214400	Active TSS	Duodenum Smooth Muscle	Duodenum
48	chr5:145214200-145214400	Flanking Active TSS	Fetal Brain Male	brain
49	chr5:145214200-145214400	Active TSS	Fetal Brain Female	brain
50	chr5:145214200-145214400	Flanking Active TSS	Fetal Heart	heart

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