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Variant report
Variant
rs568916787
Chromosome Location
chr12:49115738-49115739
allele
A/G
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:3)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
(count:3 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr12:49115296..49116961-chr12:49130691..49132638,2
K562
blood:
2
chr12:49111500..49113785-chr12:49114304..49115934,2
MCF-7
breast:
3
chr12:49108509..49113146-chr12:49113655..49117535,6
K562
blood:
No data
No data
No data
Variant related genes
Relation type
ENSG00000129315
Chromatin interaction
Extended variants information (count: 2 )
Associated traits (count: 0)
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
esv3332169
chr12:49005807-49150691
Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh
TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA
43 gene(s)
inside rSNPs
diseases
2
esv3439234
chr12:49115458-49115761
Inactive region
Chromatin interactive region
1 gene(s)
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links