Variant report

Variant	rs56891737
Chromosome Location	chr11:71642152-71642153
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RUNX3	chr11:71641411-71642889	GM12878	blood:	n/a	n/a
2	ATF2	chr11:71642138-71642547	GM12878	blood:	n/a	n/a
3	NFATC1	chr11:71642146-71642779	GM12878	blood:	n/a	n/a
4	NFIC	chr11:71641936-71642686	GM12878	blood:	n/a	n/a
5	RELA	chr11:71642077-71642860	GM19193	blood:	n/a	chr11:71642387-71642396 chr11:71642387-71642396
6	CEBPB	chr11:71642031-71642711	GM12878	blood:	n/a	n/a
7	RELA	chr11:71641250-71642946	GM12891	blood:	n/a	chr11:71642387-71642396 chr11:71642387-71642396
8	TBL1XR1	chr11:71642133-71642664	GM12878	blood:	n/a	n/a
9	RELA	chr11:71642057-71642857	GM18951	blood:	n/a	chr11:71642387-71642396 chr11:71642387-71642396
10	RUNX3	chr11:71642029-71642672	GM12878	blood:	n/a	n/a
11	FOXM1	chr11:71641508-71642812	GM12878	blood:	n/a	n/a
12	ATF2	chr11:71642069-71642876	GM12878	blood:	n/a	n/a
13	MTA3	chr11:71642080-71642994	GM12878	blood:	n/a	n/a
14	RELA	chr11:71641575-71643017	GM12878	blood:	n/a	chr11:71642387-71642396 chr11:71642387-71642396
15	RELA	chr11:71641994-71642836	GM19099	blood:	n/a	chr11:71642387-71642396 chr11:71642387-71642396
16	RELA	chr11:71642070-71642973	GM10847	blood:	n/a	chr11:71642387-71642396 chr11:71642387-71642396
17	NFIC	chr11:71640963-71642934	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:71641708..71644005-chr11:71683990..71686747,2	MCF-7	breast:
2	chr11:71641143..71643109-chr11:71654078..71656466,2	MCF-7	breast:
3	chr11:71641032..71643202-chr11:71658397..71660024,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254469	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17161699	0.86[AFR][1000 genomes]
rs34966470	0.86[AFR][1000 genomes]
rs56747669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7114081	0.88[AFR][1000 genomes]
rs7124429	0.88[AFR][1000 genomes]
rs7932263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	esv2758276	chr11:71363639-71657576	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	esv2759836	chr11:71363639-71657576	Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	nsv428262	chr11:71363639-71804055	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71638800-71642200	Active TSS	GM12878-XiMat	blood
2	chr11:71640600-71642400	Flanking Active TSS	Osteobl	bone
3	chr11:71640600-71643600	Flanking Active TSS	HUVEC	blood vessel
4	chr11:71640800-71643200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr11:71641000-71642200	Enhancers	Primary T cells fromperipheralblood	blood
6	chr11:71641000-71642800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr11:71641000-71643000	Enhancers	Primary B cells from peripheral blood	blood
8	chr11:71641000-71644000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:71641000-71671000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr11:71641200-71642400	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr11:71641200-71642800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr11:71641200-71643000	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr11:71641200-71643600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr11:71641200-71643600	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr11:71641200-71645400	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr11:71641200-71648600	Weak transcription	Placenta	Placenta
17	chr11:71641200-71650000	Weak transcription	Colonic Mucosa	Colon
18	chr11:71641200-71670800	Weak transcription	Fetal Muscle Trunk	muscle
19	chr11:71641200-71671400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr11:71641400-71642400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr11:71641400-71642600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr11:71641400-71642600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr11:71641400-71642600	Enhancers	Fetal Brain Male	brain
24	chr11:71641400-71642800	Weak transcription	Aorta	Aorta
25	chr11:71641400-71642800	Enhancers	Brain Angular Gyrus	brain
26	chr11:71641400-71642800	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr11:71641400-71642800	Enhancers	Fetal Heart	heart
28	chr11:71641400-71642800	Enhancers	Fetal Lung	lung
29	chr11:71641400-71644000	Weak transcription	Left Ventricle	heart
30	chr11:71641400-71644200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr11:71641400-71644800	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr11:71641400-71644800	Weak transcription	Primary hematopoietic stem cells	blood
33	chr11:71641400-71645000	Weak transcription	Thymus	Thymus
34	chr11:71641400-71645600	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr11:71641400-71648600	Weak transcription	Primary T cells from cord blood	blood
36	chr11:71641400-71651600	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr11:71641400-71652000	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr11:71641400-71658000	Weak transcription	Lung	lung
39	chr11:71641400-71661600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr11:71641400-71670800	Weak transcription	Esophagus	oesophagus
41	chr11:71641400-71671000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr11:71641400-71671000	Weak transcription	Fetal Thymus	thymus
43	chr11:71641400-71671400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr11:71641600-71642200	Weak transcription	Brain Anterior Caudate	brain
45	chr11:71641600-71642200	Weak transcription	Fetal Intestine Small	intestine
46	chr11:71641600-71642600	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr11:71641600-71642600	Enhancers	HSMM	muscle
48	chr11:71641600-71642800	Enhancers	Fetal Brain Female	brain
49	chr11:71641600-71642800	Enhancers	Fetal Muscle Leg	muscle
50	chr11:71641600-71643000	Enhancers	Muscle Satellite Cultured Cells	--

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