Variant report

Variant	rs568924340
Chromosome Location	chr10:98591423-98591424
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SP1	chr10:98591353-98591896	A549	lung:	n/a	chr10:98591711-98591723 chr10:98591711-98591723 chr10:98591712-98591721 chr10:98591708-98591722
2	CEBPB	chr10:98591420-98591789	K562	blood:	n/a	n/a
3	POLR2A	chr10:98591420-98592955	HL-60	blood:	n/a	n/a
4	NRF1	chr10:98591379-98592155	SK-N-SH	brain:	n/a	n/a
5	PBX3	chr10:98591420-98591934	SK-N-SH	brain:	n/a	n/a
6	UBTF	chr10:98591366-98593774	K562	blood:	n/a	n/a
7	IKZF1	chr10:98591106-98591619	GM12878	blood:	n/a	n/a
8	CTCF	chr10:98591420-98591570	HPAF	blood vessel:	n/a	n/a
9	POLR2A	chr10:98591371-98592863	MCF10A-Er-Src	breast:	n/a	n/a
10	MYC	chr10:98591347-98593316	K562	blood:	n/a	chr10:98591712-98591722 chr10:98593017-98593027
11	MYC	chr10:98591214-98592929	A549	lung:	n/a	chr10:98591712-98591722
12	MYBL2	chr10:98591414-98591836	HepG2	liver:	n/a	n/a
13	HA-E2F1	chr10:98591423-98591932	MCF-7	breast:	n/a	chr10:98591751-98591760 chr10:98591716-98591726 chr10:98591815-98591825 chr10:98591757-98591767
14	CEBPD	chr10:98591419-98591875	K562	blood:	n/a	n/a
15	RCOR1	chr10:98591356-98591884	GM12878	blood:	n/a	n/a
16	POLR2A	chr10:98591396-98592280	K562	blood:	n/a	n/a
17	STAT3	chr10:98591411-98591727	MCF10A-Er-Src	breast:	n/a	chr10:98591540-98591551 chr10:98591709-98591721
18	NFIC	chr10:98591336-98591825	GM12878	blood:	n/a	n/a
19	ARID3A	chr10:98591206-98591623	HepG2	liver:	n/a	n/a
20	POLR2A	chr10:98591289-98591815	K562	blood:	n/a	n/a
21	POLR2A	chr10:98591345-98592558	PANC-1	pancreas:	n/a	n/a
22	POLR2A	chr10:98591421-98591860	U87	brain:	n/a	n/a
23	TEAD4	chr10:98591368-98591920	K562	blood:	n/a	n/a
24	TBL1XR1	chr10:98591208-98592684	K562	blood:	n/a	n/a
25	ZNF384	chr10:98591308-98591688	GM12878	blood:	n/a	n/a
26	ELF1	chr10:98591417-98591975	K562	blood:	n/a	chr10:98591809-98591821 chr10:98591775-98591784 chr10:98591774-98591785
27	TCF12	chr10:98591373-98593212	ECC-1	luminal epithelium:	n/a	n/a
28	EP300	chr10:98591196-98592070	K562	blood:	n/a	chr10:98591775-98591782 chr10:98591556-98591570
29	E2F4	chr10:98591163-98592818	MCF10A-Er-Src	breast:	n/a	chr10:98591751-98591760 chr10:98592308-98592322 chr10:98591716-98591726 chr10:98591815-98591825 chr10:98591757-98591767
30	ZNF384	chr10:98591203-98592208	K562	blood:	n/a	n/a
31	FOXM1	chr10:98591412-98591841	GM12878	blood:	n/a	n/a
32	MTA3	chr10:98591326-98591832	GM12878	blood:	n/a	n/a
33	MXI1	chr10:98591415-98591995	Hela-S3	cervix:	n/a	n/a
34	POLR2A	chr10:98591418-98592965	Hela-S3	cervix:	n/a	n/a
35	POLR2A	chr10:98591330-98592964	HUVEC	blood vessel:	n/a	n/a
36	POLR2A	chr10:98591337-98593539	GM12892	blood:	n/a	n/a
37	PML	chr10:98591380-98591831	K562	blood:	n/a	n/a
38	POLR2A	chr10:98591383-98592985	K562	blood:	n/a	n/a
39	POLR2A	chr10:98591390-98592938	PFSK-1	brain:	n/a	n/a
40	POLR2A	chr10:98591417-98592946	Hela-S3	cervix:	n/a	n/a
41	TEAD4	chr10:98591366-98591835	K562	blood:	n/a	n/a
42	POLR2A	chr10:98591368-98592997	GM12891	blood:	n/a	n/a
43	GABPA	chr10:98591393-98591886	MCF-7	breast:	n/a	n/a
44	RFX5	chr10:98591380-98592211	Hela-S3	cervix:	n/a	n/a
45	MYC	chr10:98591417-98593171	K562	blood:	n/a	chr10:98591712-98591722 chr10:98593017-98593027
46	TBL1XR1	chr10:98591405-98592152	GM12878	blood:	n/a	n/a
47	POLR2A	chr10:98591401-98592988	K562	blood:	n/a	n/a
48	GTF2F1	chr10:98591419-98591782	Hela-S3	cervix:	n/a	n/a
49	POLR2A	chr10:98591371-98592856	K562	blood:	n/a	n/a
50	MYC	chr10:98591358-98592845	MCF10A-Er-Src	breast:	n/a	chr10:98591712-98591722

No.	Distal block	Cell Line	Cell type
1	chr10:98591262..98592221-chr5:108083306..108084137,2	Hela-S3	cervix:
2	chr10:98590420..98592007-chr10:98615843..98619097,3	K562	blood:
3	chr10:98591162..98592122-chr7:106809872..106810661,2	Hela-S3	cervix:
4	chr10:98398475..98400373-chr10:98590281..98591916,2	MCF-7	breast:
5	chr10:98345733..98347828-chr10:98591279..98593531,2	MCF-7	breast:
6	chr10:98392223..98394189-chr10:98590324..98593027,3	MCF-7	breast:
7	chr10:98272672..98275170-chr10:98590720..98593680,2	MCF-7	breast:
8	chr10:98584665..98586917-chr10:98589906..98591474,2	K562	blood:
9	chr10:98133863..98136449-chr10:98590863..98592811,2	MCF-7	breast:
10	chr10:98523538..98526378-chr10:98589191..98591883,2	MCF-7	breast:
11	chr10:98345052..98347789-chr10:98590945..98593407,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PIK3AP1-6	chr10:98590424-98592003	NONHSAT015837

Variant related genes	Relation type
MIR607	TF binding region
LCOR	TF binding region
ENSG00000151422	Chromatin interaction
ENSG00000155629	Chromatin interaction
ENSG00000105856	Chromatin interaction
ENSG00000077147	Chromatin interaction
ENSG00000095587	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv895910	chr10:98386483-98640994	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1053801	chr10:98506832-98610101	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
4	nsv825532	chr10:98567434-98618034	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
5	esv3427855	chr10:98590262-98594060	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	esv3419281	chr10:98590962-98594060	Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	esv3420262	chr10:98590987-98593835	Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98590000-98591600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr10:98590000-98591600	Enhancers	Stomach Mucosa	stomach
3	chr10:98590200-98594600	Active TSS	HUES48 Cell Line	embryonic stem cell
4	chr10:98590400-98594400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr10:98590400-98594400	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr10:98590600-98591600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
7	chr10:98590600-98594400	Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chr10:98590800-98591600	Flanking Active TSS	Dnd41	blood
9	chr10:98590800-98591600	Flanking Active TSS	Hela-S3	cervix
10	chr10:98590800-98591600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr10:98590800-98591600	Flanking Active TSS	NHDF-Ad	bronchial
12	chr10:98590800-98593600	Active TSS	Rectal Smooth Muscle	rectum
13	chr10:98590800-98594000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:98591000-98591600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
15	chr10:98591000-98591600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
16	chr10:98591000-98591600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
17	chr10:98591000-98591600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr10:98591000-98591600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr10:98591000-98591600	Flanking Active TSS	Duodenum Mucosa	Duodenum
20	chr10:98591000-98591600	Flanking Active TSS	A549	lung
21	chr10:98591000-98591600	Flanking Active TSS	NHEK	skin
22	chr10:98591000-98591600	Flanking Active TSS	Osteobl	bone
23	chr10:98591000-98591800	Flanking Active TSS	Primary B cells from cord blood	blood
24	chr10:98591000-98591800	Active TSS	Right Atrium	heart
25	chr10:98591000-98593200	Active TSS	Sigmoid Colon	Sigmoid Colon
26	chr10:98591000-98593200	Active TSS	Thymus	Thymus
27	chr10:98591000-98593400	Active TSS	Stomach Smooth Muscle	stomach
28	chr10:98591000-98593400	Active TSS	NH-A	brain
29	chr10:98591000-98593800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr10:98591000-98594000	Active TSS	Fetal Lung	lung
31	chr10:98591000-98594400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr10:98591000-98594800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr10:98591000-98594800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr10:98591200-98591600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr10:98591200-98591600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
36	chr10:98591200-98591600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
37	chr10:98591200-98591600	Flanking Active TSS	Primary B cells from peripheral blood	blood
38	chr10:98591200-98591600	Flanking Active TSS	Primary T cells from cord blood	blood
39	chr10:98591200-98591600	Flanking Active TSS	Primary hematopoietic stem cells	blood
40	chr10:98591200-98591600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
41	chr10:98591200-98591600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
42	chr10:98591200-98591600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
43	chr10:98591200-98591600	Flanking Active TSS	Adipose Nuclei	Adipose
44	chr10:98591200-98591600	Flanking Active TSS	Liver	Liver
45	chr10:98591200-98591600	Flanking Active TSS	Fetal Intestine Small	intestine
46	chr10:98591200-98591600	Flanking Active TSS	HUVEC	blood vessel
47	chr10:98591200-98591800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
48	chr10:98591200-98592000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr10:98591200-98592800	Active TSS	Colonic Mucosa	Colon
50	chr10:98591200-98593000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin

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