Variant report

Variant	rs568963414
Chromosome Location	chr19:36901753-36901754
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833816	chr19:36824257-37034287	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv1066026	chr19:36878441-36947928	ZNF genes & repeats Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv1067101	chr19:36901010-36956251	ZNF genes & repeats Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36880400-36904600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr19:36882200-36908800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr19:36882400-36907600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr19:36882600-36904200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr19:36883000-36905200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
6	chr19:36885600-36908000	Weak transcription	K562	blood
7	chr19:36889800-36908200	Weak transcription	HepG2	liver
8	chr19:36891000-36904800	Strong transcription	Dnd41	blood
9	chr19:36891800-36908200	Weak transcription	Fetal Heart	heart
10	chr19:36891800-36908200	Weak transcription	Hela-S3	cervix
11	chr19:36894400-36902600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr19:36895000-36908200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr19:36895400-36901800	Strong transcription	Left Ventricle	heart
14	chr19:36896400-36901800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr19:36896600-36908200	Weak transcription	Right Ventricle	heart
16	chr19:36896600-36908400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr19:36897200-36908200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr19:36898400-36901800	ZNF genes & repeats	Primary T cells from cord blood	blood
19	chr19:36898400-36901800	ZNF genes & repeats	Fetal Brain Female	brain
20	chr19:36898400-36902400	ZNF genes & repeats	Ovary	ovary
21	chr19:36898400-36904400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
22	chr19:36898400-36904600	ZNF genes & repeats	Primary B cells from cord blood	blood
23	chr19:36898400-36904600	ZNF genes & repeats	Liver	Liver
24	chr19:36898400-36906800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr19:36898400-36908600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
26	chr19:36898800-36901800	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
27	chr19:36898800-36902000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr19:36898800-36902200	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr19:36899000-36902800	ZNF genes & repeats	Fetal Intestine Small	intestine
30	chr19:36899000-36904400	ZNF genes & repeats	Brain Germinal Matrix	brain
31	chr19:36899000-36908200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr19:36899200-36902000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr19:36899200-36903600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr19:36899200-36908400	Weak transcription	NH-A	brain
35	chr19:36899400-36902200	ZNF genes & repeats	Fetal Stomach	stomach
36	chr19:36899600-36904000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr19:36899800-36902200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
38	chr19:36899800-36905600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr19:36899800-36908200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr19:36900000-36902000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr19:36900000-36908200	Weak transcription	HUVEC	blood vessel
42	chr19:36900200-36902400	ZNF genes & repeats	Fetal Muscle Leg	muscle
43	chr19:36900200-36902600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr19:36900200-36903600	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr19:36900400-36903200	Weak transcription	HSMM	muscle
46	chr19:36900400-36903400	Weak transcription	Osteobl	bone
47	chr19:36900400-36908200	Weak transcription	Brain Substantia Nigra	brain
48	chr19:36900400-36908400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr19:36900600-36902200	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
50	chr19:36900600-36908000	Weak transcription	Skeletal Muscle Male	skeletal muscle

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