Variant report

Variant	rs568987908
Chromosome Location	chr7:99767086-99767087
allele	-/TGTC
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:6)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:6 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HDAC2	chr7:99766859-99767243	HepG2	liver:	n/a	n/a
2	FOXA1	chr7:99766938-99767468	HepG2	liver:	n/a	n/a
3	FOXA1	chr7:99767000-99767381	HepG2	liver:	n/a	n/a
4	ZBTB33	chr7:99766810-99767130	HepG2	liver:	n/a	n/a
5	CHD2	chr7:99766722-99767140	HepG2	liver:	n/a	n/a
6	FOXA2	chr7:99766894-99767322	HepG2	liver:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:99765936..99768056-chr7:99933468..99935315,2	MCF-7	breast:
2	chr7:99722989..99725299-chr7:99765858..99767612,2	MCF-7	breast:
3	chr7:99764650..99767201-chr7:99768632..99771682,4	MCF-7	breast:
4	chr7:99697328..99700192-chr7:99766386..99767944,2	MCF-7	breast:
5	chr7:99767011..99769810-chr7:99997937..100000138,2	MCF-7	breast:
6	chr7:99752857..99757651-chr7:99763240..99770051,14	MCF-7	breast:
7	chr7:99749770..99752333-chr7:99765768..99768227,2	MCF-7	breast:
8	chr7:99755120..99757903-chr7:99766969..99769742,4	K562	blood:
9	chr7:99753295..99755968-chr7:99764966..99767548,3	K562	blood:

No data

Variant related genes	Relation type
GAL3ST4	TF binding region
ENSG00000272752	Chromatin interaction
ENSG00000242798	Chromatin interaction
ENSG00000213420	Chromatin interaction
ENSG00000078487	Chromatin interaction
ENSG00000188186	Chromatin interaction
ENSG00000214309	Chromatin interaction
ENSG00000146826	Chromatin interaction
ENSG00000121716	Chromatin interaction
ENSG00000266154	Chromatin interaction
ENSG00000166508	Chromatin interaction
ENSG00000242294	Chromatin interaction
ENSG00000221838	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534298	chr7:99478011-99886076	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1132 gene(s)	inside rSNPs	diseases
2	nsv607931	chr7:99664817-99796146	Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1097 gene(s)	inside rSNPs	diseases
3	esv1798486	chr7:99689883-99930879	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1085 gene(s)	inside rSNPs	diseases
4	esv1833059	chr7:99689883-99930879	Flanking Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1085 gene(s)	inside rSNPs	diseases
5	esv3350965	chr7:99747460-100146105	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	304 gene(s)	inside rSNPs	diseases
6	nsv427794	chr7:99750981-99960900	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
7	nsv428180	chr7:99750981-99960900	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
8	nsv888773	chr7:99751594-99772298	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
9	nsv971181	chr7:99757433-99769748	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
10	nsv5867	chr7:99766774-99799755	Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99763800-99767200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
2	chr7:99763800-99767200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
3	chr7:99764600-99767400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
4	chr7:99765000-99767200	Bivalent Enhancer	Fetal Brain Male	brain
5	chr7:99765400-99768600	Weak transcription	Small Intestine	intestine
6	chr7:99766000-99767200	Flanking Active TSS	Thymus	Thymus
7	chr7:99766000-99768800	Weak transcription	Lung	lung
8	chr7:99766200-99768600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:99766200-99768800	Weak transcription	Gastric	stomach
10	chr7:99766200-99768800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr7:99766200-99769000	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr7:99766400-99768800	Weak transcription	Esophagus	oesophagus
13	chr7:99766400-99768800	Weak transcription	HMEC	breast
14	chr7:99766400-99770000	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr7:99766600-99767200	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr7:99766600-99767200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr7:99766600-99767200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
18	chr7:99766600-99767200	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr7:99766600-99767200	Enhancers	Brain Substantia Nigra	brain
20	chr7:99766600-99767200	Bivalent Enhancer	Fetal Intestine Large	intestine
21	chr7:99766600-99767200	Bivalent Enhancer	Fetal Intestine Small	intestine
22	chr7:99766600-99767200	Bivalent Enhancer	Fetal Muscle Leg	muscle
23	chr7:99766600-99767200	Enhancers	Right Ventricle	heart
24	chr7:99766600-99767200	Enhancers	HSMMtube	muscle
25	chr7:99766600-99767200	Enhancers	NH-A	brain
26	chr7:99766600-99767200	Enhancers	NHDF-Ad	bronchial
27	chr7:99766600-99767200	Enhancers	NHLF	lung
28	chr7:99766600-99767400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
29	chr7:99766600-99767400	Enhancers	Brain Germinal Matrix	brain
30	chr7:99766600-99767400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr7:99766600-99767400	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
32	chr7:99766600-99767600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr7:99766600-99767600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr7:99766600-99767600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
35	chr7:99766600-99767600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr7:99766600-99767800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr7:99766600-99767800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr7:99766600-99767800	Weak transcription	Brain Angular Gyrus	brain
39	chr7:99766600-99768000	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr7:99766600-99768000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
41	chr7:99766600-99768200	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr7:99766600-99768200	Enhancers	Dnd41	blood
43	chr7:99766600-99768400	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr7:99766600-99768400	Enhancers	HUES48 Cell Line	embryonic stem cell
45	chr7:99766600-99768400	Enhancers	HUES64 Cell Line	embryonic stem cell
46	chr7:99766600-99768400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr7:99766600-99768400	Enhancers	Primary T helper naive cells from peripheral blood	blood
48	chr7:99766600-99768600	Enhancers	H1 Cell Line	embryonic stem cell
49	chr7:99766600-99768600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
50	chr7:99766600-99768600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links