Variant report

Variant	rs56901144
Chromosome Location	chr10:26775417-26775418
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26772817..26775634-chr10:26777086..26779692,3	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs74128330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1043832	chr10:26669040-26809400	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26767200-26777400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr10:26769400-26776200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr10:26769400-26776200	Enhancers	Primary T killer memory cells from peripheral blood	blood
4	chr10:26769400-26792800	Weak transcription	Spleen	Spleen
5	chr10:26769400-26797000	Weak transcription	Pancreas	Pancrea
6	chr10:26769400-26800600	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr10:26769400-26801000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr10:26769400-26802000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr10:26771600-26776200	Enhancers	Primary T cells fromperipheralblood	blood
10	chr10:26771600-26776200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr10:26771600-26776200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr10:26771600-26776800	Enhancers	Primary B cells from peripheral blood	blood
13	chr10:26771600-26777400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr10:26771600-26778400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr10:26771800-26775800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:26771800-26777400	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr10:26771800-26777600	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr10:26772400-26775800	Enhancers	Primary T cells from cord blood	blood
19	chr10:26772400-26779600	Genic enhancers	Fetal Thymus	thymus
20	chr10:26773800-26776600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr10:26774000-26775600	Enhancers	NH-A	brain
22	chr10:26774000-26775800	Enhancers	Thymus	Thymus
23	chr10:26774000-26776000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr10:26774000-26776000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
25	chr10:26774000-26776400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr10:26774200-26776800	Enhancers	Primary hematopoietic stem cells	blood
27	chr10:26774200-26776800	Enhancers	Placenta Amnion	Placenta Amnion
28	chr10:26774200-26789200	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr10:26774400-26776400	Weak transcription	Gastric	stomach
30	chr10:26774600-26775600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr10:26774600-26775800	Weak transcription	Stomach Mucosa	stomach
32	chr10:26774800-26775600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr10:26774800-26775600	Weak transcription	NHDF-Ad	bronchial
34	chr10:26774800-26775800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr10:26774800-26775800	Weak transcription	Fetal Lung	lung
36	chr10:26774800-26778600	Strong transcription	Dnd41	blood
37	chr10:26775000-26775600	Enhancers	NHEK	skin
38	chr10:26775000-26776400	Enhancers	NHLF	lung
39	chr10:26775000-26776600	Flanking Active TSS	Hela-S3	cervix
40	chr10:26775200-26775600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr10:26775200-26776000	Flanking Active TSS	A549	lung
42	chr10:26775200-26776200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
43	chr10:26775200-26776400	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr10:26775200-26776400	Enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr10:26775200-26776400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
46	chr10:26775200-26776600	Enhancers	Colon Smooth Muscle	Colon
47	chr10:26775400-26775600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr10:26775400-26775600	Flanking Active TSS	Adipose Nuclei	Adipose
49	chr10:26775400-26775600	Enhancers	Esophagus	oesophagus
50	chr10:26775400-26775600	Genic enhancers	GM12878-XiMat	blood

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