Variant report

Variant	rs56901236
Chromosome Location	chr6:145080703-145080704
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10499237	0.81[EUR][1000 genomes]
rs12525007	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4419685	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4896739	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62427228	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6922804	0.81[ASN][1000 genomes]
rs6927442	0.92[AFR][1000 genomes]
rs7764891	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9791320	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1032838	chr6:144978504-145110121	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830833	chr6:145001310-145201143	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv1021098	chr6:145017386-145106441	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145011800-145090200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr6:145011800-145096600	Weak transcription	Thymus	Thymus
3	chr6:145024000-145087200	Weak transcription	Psoas Muscle	Psoas
4	chr6:145040000-145094600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:145040000-145114600	Weak transcription	NHLF	lung
6	chr6:145046000-145122200	Weak transcription	Colonic Mucosa	Colon
7	chr6:145047600-145083400	Weak transcription	Right Ventricle	heart
8	chr6:145047600-145096600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:145047600-145115000	Weak transcription	Esophagus	oesophagus
10	chr6:145047600-145115000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr6:145049400-145098400	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr6:145049600-145088800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:145054000-145095600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr6:145054200-145093400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr6:145054400-145100000	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr6:145059600-145096600	Weak transcription	Lung	lung
17	chr6:145059600-145097400	Weak transcription	Spleen	Spleen
18	chr6:145059800-145096600	Weak transcription	Fetal Stomach	stomach
19	chr6:145066200-145090200	Weak transcription	Fetal Kidney	kidney
20	chr6:145066200-145126200	Weak transcription	Stomach Mucosa	stomach
21	chr6:145066400-145087800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr6:145066400-145090400	Weak transcription	Pancreas	Pancrea
23	chr6:145066400-145090600	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr6:145067000-145083800	Weak transcription	Fetal Lung	lung
25	chr6:145067800-145115800	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr6:145068000-145082200	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr6:145068200-145081000	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr6:145068200-145081200	Strong transcription	Dnd41	blood
29	chr6:145068800-145090600	Weak transcription	Small Intestine	intestine
30	chr6:145068800-145115000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr6:145069000-145089200	Weak transcription	HSMMtube	muscle
32	chr6:145069600-145093400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr6:145069800-145094200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr6:145069800-145101800	Weak transcription	Aorta	Aorta
35	chr6:145070000-145090600	Weak transcription	Left Ventricle	heart
36	chr6:145070000-145092600	Weak transcription	Fetal Intestine Small	intestine
37	chr6:145070200-145088600	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr6:145070200-145094000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr6:145070600-145094400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr6:145072200-145101800	Weak transcription	Fetal Intestine Large	intestine
41	chr6:145072400-145083400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr6:145072600-145094800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr6:145072800-145093600	Weak transcription	Placenta	Placenta
44	chr6:145073200-145105400	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr6:145073400-145090200	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr6:145073800-145089200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr6:145073800-145089800	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr6:145074200-145087200	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr6:145074200-145089400	Weak transcription	Fetal Heart	heart
50	chr6:145074400-145081000	Strong transcription	Primary B cells from peripheral blood	blood

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