Variant report

Variant	rs56903157
Chromosome Location	chr22:33584905-33584906
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1476005	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1476006	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16985344	0.85[ASN][1000 genomes]
rs16991966	0.83[ASN][1000 genomes]
rs2032484	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66576024	0.83[ASN][1000 genomes]
rs67233223	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67534349	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs68035672	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72620416	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7285709	0.83[ASN][1000 genomes]
rs743794	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8136990	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8140034	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531587	chr22:33346710-33809338	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	nsv948523	chr22:33414164-34098417	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
3	nsv1067068	chr22:33452180-33851033	Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
4	nsv1056019	chr22:33527873-33657289	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv933455	chr22:33532697-33915429	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33584200-33585000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr22:33584200-33585400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr22:33584200-33585600	Enhancers	Brain Cingulate Gyrus	brain
4	chr22:33584200-33586000	Enhancers	Brain Substantia Nigra	brain
5	chr22:33584400-33585200	Enhancers	Brain Angular Gyrus	brain
6	chr22:33584400-33585200	Enhancers	Brain Anterior Caudate	brain
7	chr22:33584400-33585200	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr22:33584400-33585400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr22:33584400-33585800	Enhancers	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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