Variant report

Variant	rs569036793
Chromosome Location	chr1:153233524-153233525
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013433	chr1:152619305-153262215	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
2	nsv535170	chr1:152619305-153262215	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
3	nsv1001834	chr1:152648853-153279143	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
4	nsv547899	chr1:152672005-153245082	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
5	nsv1010488	chr1:152901263-153670972	Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
6	nsv535171	chr1:152901263-153670972	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
7	nsv533877	chr1:152923645-153468131	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
8	nsv1003014	chr1:153209833-153263691	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv535172	chr1:153209833-153263691	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv998032	chr1:153210770-153264131	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	esv3397000	chr1:153232553-153235701	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3492670	chr1:153232803-153235301	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3492671	chr1:153232803-153235301	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:153232800-153233600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
2	chr1:153232800-153234000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr1:153233000-153233600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr1:153233000-153234000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr1:153233200-153233600	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:153233200-153233600	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
7	chr1:153233200-153233600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
8	chr1:153233200-153233600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:153233200-153233800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr1:153233200-153233800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr1:153233200-153233800	Bivalent Enhancer	Adipose Nuclei	Adipose
12	chr1:153233200-153234000	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
13	chr1:153233200-153234000	Bivalent/Poised TSS	Colonic Mucosa	Colon
14	chr1:153233200-153234200	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr1:153233200-153234200	Active TSS	Aorta	Aorta
16	chr1:153233200-153234200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
17	chr1:153233200-153234200	Bivalent/Poised TSS	Fetal Stomach	stomach
18	chr1:153233200-153234200	Active TSS	Ovary	ovary
19	chr1:153233200-153234200	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
20	chr1:153233200-153234400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
21	chr1:153233200-153234400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
22	chr1:153233200-153234400	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
23	chr1:153233200-153234400	Bivalent/Poised TSS	Fetal Brain Female	brain
24	chr1:153233200-153234600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
25	chr1:153233200-153234600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
26	chr1:153233200-153234600	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr1:153233200-153234600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
28	chr1:153233200-153234600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
29	chr1:153233200-153234600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
30	chr1:153233200-153234800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr1:153233200-153234800	Active TSS	Breast Myoepithelial Primary Cells	Breast
32	chr1:153233200-153235000	Enhancers	Spleen	Spleen
33	chr1:153233400-153233600	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
34	chr1:153233400-153233600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
35	chr1:153233400-153233600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr1:153233400-153233600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr1:153233400-153233600	Bivalent Enhancer	Left Ventricle	heart
38	chr1:153233400-153233600	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
39	chr1:153233400-153233800	Active TSS	Primary T cells from cord blood	blood
40	chr1:153233400-153234000	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr1:153233400-153234000	Active TSS	Right Ventricle	heart
42	chr1:153233400-153234000	Enhancers	GM12878-XiMat	blood
43	chr1:153233400-153234200	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr1:153233400-153234200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
45	chr1:153233400-153234200	Active TSS	Primary T helper cells PMA-I stimulated	--
46	chr1:153233400-153234200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr1:153233400-153234200	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr1:153233400-153234200	Bivalent/Poised TSS	Psoas Muscle	Psoas
49	chr1:153233400-153234200	Active TSS	Right Atrium	heart
50	chr1:153233400-153234200	Active TSS	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links