Variant report

Variant	rs56904530
Chromosome Location	chr7:22034296-22034297
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11976853	0.96[EUR][1000 genomes]
rs11976877	0.96[EUR][1000 genomes]
rs11979337	0.93[EUR][1000 genomes]
rs57862761	0.93[EUR][1000 genomes]
rs60778380	0.96[ASN][1000 genomes]
rs62447471	0.86[ASN][1000 genomes]
rs62447484	0.93[ASN][1000 genomes]
rs62447485	0.93[ASN][1000 genomes]
rs62447486	0.93[ASN][1000 genomes]
rs62447493	0.96[ASN][1000 genomes]
rs73270819	0.96[EUR][1000 genomes]
rs73270834	0.96[EUR][1000 genomes]
rs73270856	0.93[EUR][1000 genomes]
rs73270860	0.91[EUR][1000 genomes]
rs73270868	0.93[EUR][1000 genomes]
rs73270875	0.93[EUR][1000 genomes]
rs956711	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv870325	chr7:21979039-22120493	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22033800-22040400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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