Variant report

Variant	rs56905352
Chromosome Location	chr4:94748277-94748278
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs59071973	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72877822	1.00[AMR][1000 genomes]
rs992919	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008055	chr4:94169131-95030074	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv931979	chr4:94289958-95121723	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv821636	chr4:94439636-95116590	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv1792557	chr4:94738158-95027272	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:94745400-94748800	Weak transcription	Pancreas	Pancrea
2	chr4:94748000-94748400	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
3	chr4:94748000-94748600	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
4	chr4:94748000-94749000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
5	chr4:94748200-94748400	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
6	chr4:94748200-94748400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
7	chr4:94748200-94748400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
8	chr4:94748200-94748400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
9	chr4:94748200-94748400	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
10	chr4:94748200-94748400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
11	chr4:94748200-94748400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr4:94748200-94748600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr4:94748200-94748600	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 31	rectum
14	chr4:94748200-94748800	Bivalent Enhancer	Fetal Intestine Small	intestine
15	chr4:94748200-94748800	Bivalent Enhancer	NHEK	skin
16	chr4:94748200-94749200	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr4:94748200-94749400	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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