Variant report

Variant	rs569057882
Chromosome Location	chr2:85974791-85974792
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr2:85974790-85975833	GM12878	blood:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:85964549..85967309-chr2:85973437..85975079,2	K562	blood:
2	chr2:85968047..85970017-chr2:85974638..85977440,3	MCF-7	breast:
3	chr2:85972115..85974946-chr2:85980100..85981660,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ATOH8-3	chr2:85974438-85974844	l_1877_chr2:85969788-85975170_thyroid

No data

Variant related genes	Relation type
ATOH8	TF binding region
ENSG00000168874	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874468	chr2:85926598-86001255	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1012593	chr2:85966323-85997189	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv874469	chr2:85973618-86025251	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv874470	chr2:85973618-86028257	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:85971600-85975400	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr2:85971600-85977800	Weak transcription	Pancreas	Pancrea
3	chr2:85972200-85976200	Weak transcription	Gastric	stomach
4	chr2:85972400-85975800	Weak transcription	Hela-S3	cervix
5	chr2:85972400-85976200	Weak transcription	Stomach Mucosa	stomach
6	chr2:85972400-85976800	Enhancers	Primary B cells from cord blood	blood
7	chr2:85972400-85978200	Enhancers	Primary B cells from peripheral blood	blood
8	chr2:85972800-85974800	Enhancers	Brain Substantia Nigra	brain
9	chr2:85972800-85975400	Weak transcription	Liver	Liver
10	chr2:85972800-85975600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr2:85972800-85975800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:85972800-85976000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr2:85972800-85977800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr2:85973000-85974800	Enhancers	Muscle Satellite Cultured Cells	--
15	chr2:85973000-85975000	Weak transcription	HSMMtube	muscle
16	chr2:85973000-85977800	Weak transcription	Brain Germinal Matrix	brain
17	chr2:85973000-85979000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr2:85973200-85974800	Weak transcription	Fetal Heart	heart
19	chr2:85973200-85976000	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr2:85973400-85980200	Bivalent Enhancer	Fetal Muscle Leg	muscle
21	chr2:85973600-85975800	Weak transcription	Aorta	Aorta
22	chr2:85973600-85976000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr2:85973800-85975000	Weak transcription	Adipose Nuclei	Adipose
24	chr2:85973800-85975200	Weak transcription	Psoas Muscle	Psoas
25	chr2:85973800-85975200	Weak transcription	Right Ventricle	heart
26	chr2:85973800-85975400	Weak transcription	Stomach Smooth Muscle	stomach
27	chr2:85973800-85975600	Weak transcription	Colon Smooth Muscle	Colon
28	chr2:85973800-85975800	Weak transcription	HSMM	muscle
29	chr2:85973800-85976000	Weak transcription	Brain Angular Gyrus	brain
30	chr2:85973800-85976000	Weak transcription	Brain Anterior Caudate	brain
31	chr2:85973800-85976000	Weak transcription	Brain Hippocampus Middle	brain
32	chr2:85973800-85976000	Weak transcription	Ovary	ovary
33	chr2:85973800-85976000	Weak transcription	Spleen	Spleen
34	chr2:85973800-85976600	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr2:85973800-85977800	Weak transcription	Esophagus	oesophagus
36	chr2:85974000-85975200	Weak transcription	Fetal Lung	lung
37	chr2:85974000-85975400	Weak transcription	Thymus	Thymus
38	chr2:85974000-85975800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr2:85974000-85975800	Weak transcription	NHDF-Ad	bronchial
40	chr2:85974000-85976000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr2:85974000-85976200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr2:85974200-85975400	Weak transcription	Fetal Thymus	thymus
43	chr2:85974200-85975600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr2:85974200-85976000	Weak transcription	Brain Cingulate Gyrus	brain
45	chr2:85974400-85975200	Enhancers	Osteobl	bone
46	chr2:85974400-85975400	Weak transcription	Lung	lung
47	chr2:85974400-85975800	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr2:85974600-85974800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr2:85974600-85975200	Enhancers	Monocytes-CD14+_RO01746	blood
50	chr2:85974600-85975400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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