Variant report

Variant	rs569066432
Chromosome Location	chr1:179117316-179117317
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012667	chr1:179094571-179120280	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1002253	chr1:179094571-179120938	Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1001191	chr1:179097246-179120938	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1009493	chr1:179110523-179121079	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1011462	chr1:179117101-179128290	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1011210	chr1:179117101-179128676	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179099600-179119400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr1:179099600-179122600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr1:179100000-179121000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr1:179107600-179119800	Weak transcription	Liver	Liver
5	chr1:179110000-179118400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:179110200-179121400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr1:179111000-179118200	Weak transcription	Primary B cells from cord blood	blood
8	chr1:179111400-179117400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr1:179111400-179118400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr1:179111400-179121400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr1:179111400-179121400	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr1:179112200-179118800	Weak transcription	Fetal Intestine Large	intestine
13	chr1:179112200-179121800	Weak transcription	Adipose Nuclei	Adipose
14	chr1:179112200-179121800	Weak transcription	Colon Smooth Muscle	Colon
15	chr1:179112200-179124600	Weak transcription	Left Ventricle	heart
16	chr1:179112400-179117400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr1:179112400-179117400	Weak transcription	Primary hematopoietic stem cells	blood
18	chr1:179112400-179117600	Weak transcription	Right Ventricle	heart
19	chr1:179112400-179118400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr1:179112400-179119600	Weak transcription	HepG2	liver
21	chr1:179112400-179121000	Weak transcription	Primary B cells from peripheral blood	blood
22	chr1:179112400-179121200	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr1:179112400-179121400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr1:179112400-179121400	Weak transcription	Small Intestine	intestine
25	chr1:179112400-179121600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr1:179112400-179133000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr1:179112400-179139000	Weak transcription	K562	blood
28	chr1:179112800-179119000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr1:179113200-179133000	Weak transcription	Hela-S3	cervix
30	chr1:179113600-179117400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr1:179113600-179121600	Weak transcription	Ovary	ovary
32	chr1:179113800-179121200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr1:179114200-179119800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr1:179115000-179119600	Weak transcription	A549	lung
35	chr1:179115600-179121000	Weak transcription	Primary T cells from cord blood	blood
36	chr1:179116000-179121200	Weak transcription	Psoas Muscle	Psoas
37	chr1:179116000-179121600	Weak transcription	Fetal Heart	heart
38	chr1:179116200-179117600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr1:179116200-179118400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr1:179116200-179118600	Weak transcription	NH-A	brain
41	chr1:179116200-179120200	Weak transcription	NHEK	skin
42	chr1:179116200-179121000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr1:179116200-179121400	Weak transcription	HSMM	muscle
44	chr1:179116200-179122600	Weak transcription	NHLF	lung
45	chr1:179116200-179124000	Weak transcription	Osteobl	bone
46	chr1:179116200-179124400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr1:179116200-179133000	Weak transcription	NHDF-Ad	bronchial
48	chr1:179116400-179119600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr1:179116400-179121400	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr1:179116400-179121400	Weak transcription	Muscle Satellite Cultured Cells	--

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