Variant report

Variant	rs569081156
Chromosome Location	chr11:55675677-55675678
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:20)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:20 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:55675628-55675753	K562	blood:	n/a	n/a
2	CTCF	chr11:55675526-55675708	A549	lung:	n/a	n/a
3	JUND	chr11:55675507-55675696	HepG2	liver:	n/a	n/a
4	CTCF	chr11:55675661-55675683	GM19239	blood:	n/a	n/a
5	GATA2	chr11:55675504-55675784	K562	blood:	n/a	n/a
6	CTCF	chr11:55675625-55675722	Hela-S3	cervix:	n/a	n/a
7	FOSL2	chr11:55675520-55675794	HepG2	liver:	n/a	n/a
8	NR2F2	chr11:55675492-55675698	K562	blood:	n/a	n/a
9	TCF12	chr11:55675533-55675693	GM12878	blood:	n/a	n/a
10	CTCF	chr11:55675441-55675789	A549	lung:	n/a	n/a
11	CTCF	chr11:55675564-55675788	A549	lung:	n/a	n/a
12	CTCF	chr11:55675622-55675738	MCF-7	breast:	n/a	n/a
13	CTCF	chr11:55675538-55675738	K562	blood:	n/a	n/a
14	CTCF	chr11:55675628-55675696	Gliobla	brain:	n/a	n/a
15	CTCF	chr11:55675628-55675751	MCF-7	breast:	n/a	n/a
16	CTCF	chr11:55675545-55675701	K562	blood:	n/a	n/a
17	CTCF	chr11:55675625-55675716	NHEK	skin:	n/a	n/a
18	CTCF	chr11:55675539-55675697	K562	blood:	n/a	n/a
19	CTCF	chr11:55675511-55675702	A549	lung:	n/a	n/a
20	CTCF	chr11:55675625-55675741	HUVEC	blood vessel:	n/a	n/a

No data

Variant related genes	Relation type
OR5W1P	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv554797	chr11:55035411-55864161	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	nsv554800	chr11:55083434-55695985	ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	nsv1067779	chr11:55086995-55980406	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
4	nsv491694	chr11:55086995-55980406	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
5	nsv821668	chr11:55153930-55816828	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
6	nsv1036666	chr11:55460788-56010187	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
7	nsv1049004	chr11:55460788-56014767	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
8	esv2830217	chr11:55460788-56017908	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
9	nsv1043441	chr11:55468512-56010187	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
10	nsv1044174	chr11:55501796-55862172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
11	nsv832158	chr11:55550160-55701309	ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
12	nsv975923	chr11:55674641-55676038	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases
13	nsv8829	chr11:55675378-55678413	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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