Variant report

Variant	rs569096006
Chromosome Location	chr9:102684881-102684882
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:102679510..102681495-chr9:102684223..102687108,2	K562	blood:
2	chr9:102681063..102683683-chr9:102683801..102687863,4	MCF-7	breast:
3	chr9:102679685..102682942-chr9:102684269..102688000,3	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv831668	chr9:102568169-102747293	Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
5	nsv825011	chr9:102684142-102686727	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1050510	chr9:102684318-102748658	Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102669800-102686000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:102669800-102686200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr9:102669800-102687600	Weak transcription	Stomach Mucosa	stomach
4	chr9:102669800-102729800	Weak transcription	Small Intestine	intestine
5	chr9:102670000-102686000	Weak transcription	Psoas Muscle	Psoas
6	chr9:102670000-102688200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr9:102670400-102686000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr9:102670400-102688600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr9:102671200-102719200	Weak transcription	Fetal Heart	heart
10	chr9:102676600-102688000	Strong transcription	Primary B cells from cord blood	blood
11	chr9:102677400-102685600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:102677400-102686600	Strong transcription	Placenta	Placenta
13	chr9:102677400-102686600	Strong transcription	Rectal Mucosa Donor 29	rectum
14	chr9:102677600-102685200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr9:102677600-102685800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr9:102677600-102686000	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr9:102677600-102686400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr9:102677600-102686600	Strong transcription	Fetal Intestine Large	intestine
19	chr9:102677600-102686800	Strong transcription	Liver	Liver
20	chr9:102677600-102687000	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr9:102677600-102687200	Strong transcription	Primary B cells from peripheral blood	blood
22	chr9:102677600-102687800	Strong transcription	Duodenum Smooth Muscle	Duodenum
23	chr9:102677800-102686600	Strong transcription	HepG2	liver
24	chr9:102677800-102687200	Strong transcription	Duodenum Mucosa	Duodenum
25	chr9:102677800-102687400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr9:102680000-102710800	Weak transcription	HUVEC	blood vessel
27	chr9:102680400-102693800	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr9:102680400-102724800	Weak transcription	HSMM	muscle
29	chr9:102680600-102685000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
30	chr9:102680600-102689000	Weak transcription	Fetal Brain Male	brain
31	chr9:102681600-102685400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr9:102681800-102685600	Weak transcription	Spleen	Spleen
33	chr9:102681800-102685800	Weak transcription	Brain Angular Gyrus	brain
34	chr9:102681800-102690400	Weak transcription	Brain Cingulate Gyrus	brain
35	chr9:102682000-102685800	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr9:102682600-102686800	Strong transcription	Primary hematopoietic stem cells	blood
37	chr9:102682600-102693800	Weak transcription	Osteobl	bone
38	chr9:102682600-102751400	Weak transcription	NH-A	brain
39	chr9:102682800-102687800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr9:102682800-102695000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr9:102683000-102686400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr9:102683000-102687600	Weak transcription	Brain Germinal Matrix	brain
43	chr9:102683200-102685000	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
44	chr9:102683400-102687200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr9:102683600-102686800	Strong transcription	Dnd41	blood
46	chr9:102683600-102687800	Strong transcription	Rectal Mucosa Donor 31	rectum
47	chr9:102683800-102686000	Strong transcription	Placenta Amnion	Placenta Amnion
48	chr9:102683800-102686200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr9:102683800-102686600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr9:102683800-102686600	Strong transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links