The 2.0 version of rSNPBase

Variant report

Variant rs569107939
Chromosome Location chr1:61614961-61614962
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:71 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:61600000-61617200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
2 chr1:61605400-61617200 Weak transcription H9 Cell Line embryonic stem cell
3 chr1:61606000-61649000 Weak transcription Spleen Spleen
4 chr1:61606400-61616600 Weak transcription Primary hematopoietic stem cells blood
5 chr1:61607400-61615800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
6 chr1:61607600-61617000 Weak transcription Monocytes-CD14+_RO01746 blood
7 chr1:61607600-61617800 Weak transcription iPS-20b Cell Line embryonic stem cell
8 chr1:61607600-61622200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
9 chr1:61607800-61615600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
10 chr1:61607800-61616000 Weak transcription iPS-18 Cell Line embryonic stem cell
11 chr1:61607800-61616400 Weak transcription HUES48 Cell Line embryonic stem cell
12 chr1:61607800-61616600 Weak transcription ES-I3 Cell Line embryonic stem cell
13 chr1:61607800-61617200 Weak transcription Duodenum Smooth Muscle Duodenum
14 chr1:61607800-61617800 Weak transcription Rectal Mucosa Donor 29 rectum
15 chr1:61607800-61618000 Weak transcription HUES64 Cell Line embryonic stem cell
16 chr1:61607800-61622600 Weak transcription Breast Myoepithelial Primary Cells Breast
17 chr1:61608400-61617000 Weak transcription Rectal Smooth Muscle rectum
18 chr1:61608400-61617200 Weak transcription Fetal Stomach stomach
19 chr1:61608600-61617800 Weak transcription Adipose Nuclei Adipose
20 chr1:61609200-61617200 Weak transcription Sigmoid Colon Sigmoid Colon
21 chr1:61609200-61617400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
22 chr1:61609600-61615200 Weak transcription HMEC breast
23 chr1:61609600-61622800 Weak transcription Muscle Satellite Cultured Cells --
24 chr1:61610000-61615000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
25 chr1:61610000-61615800 Weak transcription Brain Cingulate Gyrus brain
26 chr1:61610000-61621800 Weak transcription Fetal Brain Male brain
27 chr1:61610000-61623400 Weak transcription Fetal Brain Female brain
28 chr1:61610200-61617200 Weak transcription Pancreas Pancrea
29 chr1:61610200-61622200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
30 chr1:61610200-61623200 Weak transcription iPS-15b Cell Line embryonic stem cell
31 chr1:61610400-61615800 Weak transcription Esophagus oesophagus
32 chr1:61610400-61616600 Weak transcription Brain Germinal Matrix brain
33 chr1:61611200-61615000 Enhancers Psoas Muscle Psoas
34 chr1:61612000-61615200 Weak transcription Small Intestine intestine
35 chr1:61612000-61635800 Weak transcription Lung lung
36 chr1:61612400-61617200 Weak transcription Fetal Muscle Leg muscle
37 chr1:61612800-61626200 Weak transcription Fetal Muscle Trunk muscle
38 chr1:61613400-61616000 Enhancers Right Atrium heart
39 chr1:61613400-61619800 Enhancers Colon Smooth Muscle Colon
40 chr1:61613600-61615600 Enhancers Skeletal Muscle Female skeletal muscle
41 chr1:61613600-61617400 Enhancers A549 lung
42 chr1:61613800-61615200 Weak transcription Brain Anterior Caudate brain
43 chr1:61613800-61615600 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
44 chr1:61613800-61615800 Enhancers K562 blood
45 chr1:61613800-61616000 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
46 chr1:61613800-61620600 Enhancers Brain Hippocampus Middle brain
47 chr1:61614000-61615800 Enhancers NHEK skin
48 chr1:61614000-61616000 Enhancers Aorta Aorta
49 chr1:61614200-61615200 Weak transcription Cortex derived primary cultured neurospheres brain
50 chr1:61614200-61615200 Weak transcription Brain Angular Gyrus brain

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015